BAC Information

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BAC

Clone NameMSMg01-502G03
Chromosome15 (Build37)
Map Location 13,919,995 - 13,920,336
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G03.T7 (MSMg01no502_g03.b1)MSMg01-502G03.TJ (MSMg01no502_g03.g1)
ACCAG577750AG577751
length742741
length of high quality
(start - end)
630 (71 - 700)344 (325 - 668)
definitionCHROMAT_FILE: MSMg01no502_g03.b1 PHD_FILE: MSMg01no502_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:24 2005CHROMAT_FILE: MSMg01no502_g03.g1 PHD_FILE: MSMg01no502_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACNCTCTCGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTAC
AAGGTATGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTC
TAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTAC
AAGGTATGTTTGTCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTC
CTTTTCACATGTTATCTATTTTTTAAGGCAGAGCGGATTCTGGATGAAAT
TCAGGGCAATCTATAAGAAGTAAAGTGGGGAGAGAGAGTAGGAGCAAAGA
GGAAATATGGTGCACAGAATAAGTATACAGGCCTTTCCAAGGGTCTTGAA
CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAG
GAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTA
GGAGAAGGAGCCTATACTCATCACTAGGTGAGCTCAAGGAGCCAGTTCTT
AATAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGAAGGCGCTCTC
CCGAGCAGGTGAAGCCACTGGACAACTAACAAAGATCGTCCAGAGACCTC
AGGAGTCATTCTCAGATTTTGTGGCCAGAATGACAGAGGCAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACTCATCTGGACTCAATTCCCAA
CAGTTAATTAAGCCAAGACACAGAGAAGCAGTTAGAAGAAGCCTTAGGGC
AGATTTCACAGAGATAGGTGATTAGATGACGGGTTGCTGGCAGGGGATGA
CAACCAGACATATCTCAGAAAGTACCACCTGAGCAGTTCATATCACCCAC
CCCAAACTCTGACTGCATAGGACATTCACCATTGGACTTCTCAGTGCTGC
TGCTGCTGCCCCTCAATTTTTTATCAAAAGGTGGTTGAATTTCCCGAGGT
TGTATGGAAGTCTGTTACCAGGGTTTTGTGAGACTTAAAGAGACCTGACT
TCTGATGGTCTTCCGGCAAAAAGTGCCCTGGGAAGAGTCATGTCAAGGAA
GAGACCCCTGTTTATTTTCCTGACAGTTGAGGTAGAAAGGATTTAGTTCT
TAAAAGTAGGATTTCAAAGATAGATGGTTAGATTGGGTACCCAAATCCTA
AACTCACTTAATCAGAGAAAACTATTTATTATCACATTGCTACTTTCAGG
CAAATATGCATGTATATTTGTGTACAAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGNTGTGNNTGTGNNNNNNTTTCCCCTTTTTATTCC
CATCCCTTTNTTCCCTTGTGTCCTCTTTTTTGCGCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g03.g1 MSMg01no502_g03.g1 CHROMAT_FILE:
MSMg01no502_g03.g1 PHD_FILE: MSMg01no502_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:24 2005
         (344 letters)



>mm_chr15_13919795_13920538
          Length = 744

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaggtggttgaatttcccgaggttgtatggaagtctgttaccagggttttgtgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaggtggttgaatttcccgaggttgtatggaagtctgttaccagggttttgtgagac 260

                                                                       
Query: 61  ttaaagagacctgacttctgatggtcttccggcaaaaagtgccctgggaagagtcatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaagagacctgacttctgatggtcttccggcaaaaagtgccctgggaagagtcatgtc 320

                                                                       
Query: 121 aaggaagagacccctgtttattttcctgacagttgaggtagaaaggatttagttcttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaagagacccctgtttattttcctgacagttgaggtagaaaggatttagttcttaaa 380

                                                                       
Query: 181 agtaggatttcaaagatagatggttagattgggtacccaaatcctaaactcacttaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaggatttcaaagatagatggttagattgggtacccaaatcctaaactcacttaatca 440

                                                                       
Query: 241 gagaaaactatttattatcacattgctactttcaggcaaatatgcatgtatatttgtgta 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gagaaaactatttattatcacattgctaatttcaggcaaatatgcatgtatatttgtgta 500

                                                     
Query: 301 caagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)