BAC Information

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BAC

Clone NameMSMg01-502L10
Chromosome15 (Build37)
Map Location 71,314,182 - 71,479,816
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9, 1810044A24Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502L10.T7 (MSMg01no502_l10.b1)MSMg01-502L10.TJ (MSMg01no502_l10.g1)
ACCAG578003AG578004
length728737
length of high quality
(start - end)
556 (62 - 617)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no502_l10.b1 PHD_FILE: MSMg01no502_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:49 2005CHROMAT_FILE: MSMg01no502_l10.g1 PHD_FILE: MSMg01no502_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,314,182 - 71,314,737)(71,479,579 - 71,479,816)
sequence
CGCTATACGACTCACTTTTCAAAGAGGAGCCGCGGAATTCAATGGTTTCC
ACAAATGGGCACACACACATATACAAACAGGGAATGAAAGTAGAAGGGGA
ATTTGAAAAGAAGGGTTTCAGCCAGAGACATGAAAGAGGGTAGTAGAGAG
TTAAAATAAATACCATTAATTATATACACATATGAGATTATCAGAGAATA
AAAAGCTGTAAAATCAAGAAAGCCTTCCCACAGAGTCTGAACTCTGCTGC
AAGGGCTGGGGTGAATAGTAGGTCTCTTGGGAAATATGGCTGATAAAGTT
TTTGTTAGCTTTGTCCTTCAAATCTCTCACATAAATCACTGCAGTCACCA
GAGGTGACAAATTGTCAAATATGAAAGTGTCCCAGGGACTAGGGTCACAG
CATTCACTACTATCAAGTGGAGGCTGCCACTGCCCCTTGTCGGGTTAAGT
AATCTCATCCAATGGCTTCAAGTGGCTCAGAAACTTTAAGGAGGCACCAC
ATCTTTGTATCCACCTGTTACTCTGAATGTGTGTGAGCACTTCCTTTACT
GTCCTCTGGATGCTGTGAAGAGGTTGCCCTGGGAACCTCACTGCTGTAAC
TGTGGATAAAACCACTGTCAGGTTTTCCAACTCAGGTTTCCCCTGTAGAT
CACAGGTGCGTTTCAGTCTTGAGTTCCTGGTGAGTAGCACCTCAAGTCCC
TGCAAACTCACAGCCTGTGGGACTTTTN
CAATGCTGTGGGATGCCTGGNGGTCGCCGGTCCAACAAAGTTAGGTGAAC
TATAGAATGACACAAAGGAATCTGTTGGAGGTTGGTGGTTCAGCTCTGGA
AAGTCACCATCAATTGAAAATCAACTGAAAATAGAAGGTTGGCCCTTATG
CTAGTACTTCTCATATATTGTGGATGTTTGGAACAAGACACAGGGTAGTG
AGGATCATTTGCTTAAAATTAGGGAACTAGGCCCCTTTTTCTGATTCTGG
AATGTGTCTTGGTATAGCCCAAGGACAAAGAGCTCCCTGACTTAGGCAGG
CTTACATAATTACTGGTTAGCAGACATGAAGAAACTAAAGGGGATTCCAC
ACAGGCAGCTCCCTCTCTCCAGCTATCAGGAGTGGGTGTCTGACCTACTT
GTTCTTCACTCATTTCCCCTTTTCCTCCCATTCTTCCCTTCCTCCCACTT
GCTTCCAGTAAAGGTGGGTGGAGGGTGAGGTTGGGATAAACTANGCAGGT
ACTGAGGAATGGCCCATGGGAACAGCACTCAACCTCTATTCCTAAGCTGA
CTCTGGGTGCTTCATTCTCCTGCGGTCAACACATTCAATTCTGCAGCACT
CTATCCCCGTAAGGGTTTAGGTTAGTGCAGACGTGTCTGTTCTTTGTATT
CTCGCCTTGGCCACTTGCTTTCTCTCCCCATTTTGCCTTACCTCTTTCCG
TGTGGGCATGACCGTTTATTTCTTTCCACGGGATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_l10.b1 MSMg01no502_l10.b1 CHROMAT_FILE:
MSMg01no502_l10.b1 PHD_FILE: MSMg01no502_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:49 2005
         (556 letters)



>mm_chr15_71313982_71314937
          Length = 956

 Score = 1036 bits (536), Expect = 0.0
 Identities = 551/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacacatatacaaacagggaatgaaagtagaaggggaatttgaaaagaagggtttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacacatatacaaacagggaatgaaagtagaaggggaatttgaaaagaagggtttcag 260

                                                                       
Query: 61  ccagagacatgaaagagggtagtagagagttaaaataaataccattaattatatacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagagacatgaaagagggtagtagagagttaaaataaataccattaattatatacacat 320

                                                                       
Query: 121 atgagattatcagagaataaaaagctgtaaaatcaagaaagccttcccacagagtctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagattatcagagaataaaaagctgtaaaatcaagaaagccttcccacagagtctgaa 380

                                                                       
Query: 181 ctctgctgcaagggctggggtgaatagtaggtctcttgggaaatatggctgataaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ctctgctgcaagggctggggtgaatagtaggtctcttgggaaatatggctgataaagtta 440

                                                                       
Query: 241 ttgttagctttgtccttcaaatctctcacataaatcactgcagtcaccagaggtgacaaa 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacagctttgtccttcaaatctctcacataaatcactgcagtcaccagaggtgacaaa 500

                                                                       
Query: 301 ttgtcaaatatgaaagtgtcccagggactagggtcacagcattcactactatcaagtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtcaaatatgaaagtgtcccagggactagggtcacagcattcactactatcaagtgga 560

                                                                       
Query: 361 ggctgccactgccccttgtcgggttaagtaatctcatccaatggcttcaagtggctcaga 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgccactgccccttgtcgggtttagtaatctcatccaatggcttcaagtggctcaga 620

                                                                       
Query: 421 aactttaaggaggcaccacatctttgtatccacctgttactctgaatgtgtgtgagcact 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactttaaggagggaccacatctttgtatccacctgttactctgaatgtgtgtgagcact 680

                                                                       
Query: 481 tcctttactgtcctctggatgctgtgaagaggttgccctgggaacctcactgctgtaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctttactgtcctctggatgctgtgaagaggttgccctgggaacctcactgctgtaact 740

                           
Query: 541 gtggataaaaccactg 556
           ||||||||||||||||
Sbjct: 741 gtggataaaaccactg 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_l10.g1 MSMg01no502_l10.g1 CHROMAT_FILE:
MSMg01no502_l10.g1 PHD_FILE: MSMg01no502_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:49 2005
         (238 letters)



>mm_chr15_71479379_71480016
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttggaggttggtggttcagctctggaaagtcaccatcaattgaaaatcaactgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgttggaggttggtggttcagctctggaaagtcaccatcaattgaaaatcaactgaaaa 379

                                                                       
Query: 61  tagaaggttggcccttatgctagtacttctcatatattgtggatgtttggaacaagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagaaggttggcccttatgctagtacttctcatatattgtggatgtttggaacaagacac 319

                                                                       
Query: 121 agggtagtgaggatcatttgcttaaaattagggaactaggcccctttttctgattctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 318 agggtagtgaggatcatttgcttaaaattagggaactaggcccctttttctgagtctgga 259

                                                                     
Query: 181 atgtgtcttggtatagcccaaggacaaagagctccctgacttaggcaggcttacataa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgtgtcttggtatagcccaaggacaaagagctccctgacttaggcaggcttacataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)