BAC Information

Click to search

BAC

Clone NameMSMg01-502O11
Chromosome15 (Build37)
Map Location 73,009,469 - 73,010,130
singlet/doubletsinglet
Overlap geneEif2c2
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1
Downstream genePtk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502O11.T7 (MSMg01no502_o11.b1)MSMg01-502O11.TJ (MSMg01no502_o11.g1)
ACCAG578146AG578147
length710736
length of high quality
(start - end)
395 (311 - 705)661 (76 - 736)
definitionCHROMAT_FILE: MSMg01no502_o11.b1 PHD_FILE: MSMg01no502_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:02 2005CHROMAT_FILE: MSMg01no502_o11.g1 PHD_FILE: MSMg01no502_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCTGCTAAACGATTCACAAGTCAAAGAGGAGCCGCGGAATGGCACAC
CTTCAAAAGAGAGAAGAGGAGAAAGCTGCACCCGGACACAAAGAAGCAGT
GTTTGCCCCCAAATTTGTGAACTCACAGAAGCAGCTGTGTCTTCAAGATT
TCCCTGTTTTCAGCTGCAGGGCCATCTACCCCCATCCCCATAGAAGAGTG
ACGGCACCAGCAGGTGTCTGGCGTCACAACTGCTATGCTGGCCAGGGGGA
CAGCTGCAGGGCTTGGTGCCATGTATCCTTTTCTGACAAGGACATGCAGG
CCTTGTTCNGTTTCAATGCTGTCTAATGGGCCGCTGTGACTCTGCATGGC
AATTGTCTGGGAAAACAAGTCACCGCCTGTGCTGGCTAGTTTTTGGTTGT
TTTTAGTCATCTTGACACAACTAGAACCCCCTGGGAAAGGGGAGCCTCAA
CCTTGATCAGACTGGCCTGGGAGCATTTCCTTAAGTAATGACTGATGTAG
GAGGGCCCAGCCTACTTTGAGTGGAGTTTCTCTTGGGCACATGGTTCTGG
GCTATACCCCCACCACCCCCAAAAAAAAAAAAAACAAGCTGAGAAAGCCA
AGTGGTTCATGCTCATTCTGGTCCCTGCTTTATCCTCTCCCTCCAGGTTC
CTCACTTATCTTTGCTGAATAATGCACTACATCCTTTTATTACTTTAGGG
TTTCTCTGTN
CAATGCAGTGGGATGCCTGGNGGCCGCCTGGTCAAAAATAGTAGGTGAAC
TATAGAAGTACAAAACAAGTCTGNCAGGATTGGTGCTTGCCCAAGGCAGC
CAGCCAGGCTTGGAGCCTCGCCTGCAGAGCTAGGACGACAGCATTGCCTG
CAAGTGCTGCTCTGTAGCTGGTGTGCCAATACAGATATGAGCCCCAGTCA
GGCAGTTCTTAGACCTGCTTTCGACTGAGCAGAATCTTAACCTGTTTATG
CAAAGAGCATTAAGAAGTATCTGCCTCCCCATGTTTCCATGTGTGTCCGC
GCAGGTGATANNGTCNCTTTGTCTCTGCTGGTCCTGACTCCCAGGGAGCT
CATTTGAAGCTGAGTCCTAAGAACGAACCATCTTGAGCGGGTCACTGGAG
AGCAAGCGGCCAATGGTGCCAATGGTTTAAAGAGAGAGGAATTGGGGTAT
AGGGCACTAAAACTATGGGGCCATGAAAGGCCAGGTTAGCATCTGTGGGA
GTCAGAGAATGTTGAGGAGGAGGAGGCCTGGGCAGAAACTGCTACCCAAG
AGCTGGGGCACTGGGTGGTCAGGCTCTTGGACAAATCCTCCAACAGTTTC
TTATTCCATATTTGGGCAGGAGCTGGCAGCCATACTGGGACGGGAATGAA
AAGAAAATCATAGGTGAGATTGGTTGGTCAGGAATCATGTTGAGTGGAGT
GACCCTTGGACACCCCCCCTACCTTTTAATTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_o11.g1 MSMg01no502_o11.g1 CHROMAT_FILE:
MSMg01no502_o11.g1 PHD_FILE: MSMg01no502_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:03 2005
         (661 letters)



>mm_chr15_73009269_73010330
          Length = 1062

 Score = 1154 bits (597), Expect = 0.0
 Identities = 646/666 (96%), Gaps = 9/666 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggattggtgcttgcccaaggcagccagccaggcttggagcctcgcctgcagagctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aggattggtgcttgcccaaggcagccagccaggcttggagcctcgcctgcagagctagga 803

                                                                       
Query: 61  cgacagcattgcctgcaagtgctgctctgtagctggtgtgccaatacagatatgagcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cgacagcattgcctgcaagtgctgctctgtagctggtgtgccaatacagatatgagcccc 743

                                                                       
Query: 121 agtcaggcagttcttagacctgctttcgactgagcagaatcttaacctgtttatgcaaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 742 agtcaggcagttcttagacctgctttcgactgagcagaatcttaacctggcgatgcaaag 683

                                                                       
Query: 181 agcattaagaagtatctgcctccccatgtttccatgtgtgtccgcgcaggtg--atanng 238
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||  ||    
Sbjct: 682 agcactaagaagtatctgcctccccatgtttccatgtgtgtctgcgcaggtgtcat---- 627

                                                                       
Query: 239 t--cnctttgtctctgctggtcctgactcccagggagctcatttgaagctgagtcctaag 296
           |  | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 626 tggctctttgtctctgctggtcctgactcccagggagctcatctgaagctgagtcctagg 567

                                                                       
Query: 297 aacgaaccatcttgagcgggtcactggagagcaagcggccaatggtgccaatggtttaaa 356
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 566 aacgaaccatcttgagcgggtcactggagagcaagcggtcaatggtgccaatggtttaaa 507

                                                                       
Query: 357 gagagaggaattggggtatagggcactaaaactatggggccatgaaaggccaggttagca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 gagagaggaattggggtatagggcactaaaactatggggccatgaaaggccgggttagca 447

                                                                       
Query: 417 tctgtgggagtcagagaatgttgaggaggaggaggcctgggcagaaactgctacccaaga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctgtgggagtcagagaatgttgaggaggaggaggcctgggcagaaactgctacccaaga 387

                                                                       
Query: 477 gctggggcactgggtggtcaggctcttggacaaatcctccaacagtttcttattccatat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctggggcactgggtggtcaggctcttggacaaatcctccaacagtttcttattccatat 327

                                                                       
Query: 537 ttgggcaggagctggcagccatactgggacgggaatgaaaagaaaatcataggtgagatt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgggcaggagctggcagccatactgggacgggaatgaaaagaaaatcataggtgagatt 267

                                                                       
Query: 597 ggttggtcaggaatcatgttgagtggagtgacccttggac-accccccctaccttttaat 655
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 266 ggttggtcaggaatcatgttgagtggagtgacccttggaccaccccccccaccttttaat 207

                 
Query: 656 ttaaat 661
           ||||||
Sbjct: 206 ttaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)