BAC Information

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BAC

Clone NameMSMg01-502P08
Chromosome15 (Build37)
Map Location 12,078,160 - 12,078,437
singlet/doubletsinglet
Overlap geneZfr
Upstream geneAdamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027
Downstream geneLOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P08.T7 (MSMg01no502_p08.b1)MSMg01-502P08.TJ (MSMg01no502_p08.g1)
ACCAG578188AG578189
length678725
length of high quality
(start - end)
282 (266 - 547)197 (123 - 319)
definitionCHROMAT_FILE: MSMg01no502_p08.b1 PHD_FILE: MSMg01no502_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005CHROMAT_FILE: MSMg01no502_p08.g1 PHD_FILE: MSMg01no502_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTACATAAAAAAAGGCGTCAAGAACAATGTTCTTCAATATTCTATGTAT
GGGTACTTCATGCTTGAGTGTGTGTGTGCTGAAGAGTAAACAGAGCAAGC
ACAACCTATGTTTCTGTTTGAGACGGTAGCCCAGCCTTTCTGTAGGCAAG
GTTTTCCTGAGACCATCCAGGGAGTGAGTGCCTGGGATCTTATTATCCCT
GCTTTCTGAATGAACACTAGGATTCTAAGCTCAGGCAACATGAGACATCT
TTTACTTANGTCGNCTGGGGATCAAACTTGTGAAAGTCTGTTTGGAAAAC
ATTACTGAGCTGTTTTGTTTTTAACCCAATAGCTTTGAATTACAAAAGTA
CTTTCACAAATAGACTATATATAAGATAAACTGCCCATAGTTTTAAGAAC
TTTTATTTATTTTTTTTGCTTGTGTATAACACTGGACAGAAAATAATAAC
TTAAAAAAATCATTACACAAGTCTGATTATAGAATTAATCAATCTGCAAA
ACTACTGCATGATAGTAGTTCTTTATAAAAAGTTATATTTATAAAATTTA
AATTTGAAAATCTGAATGCACCTTAATATTTAACTCTAGTTTAACTAGAT
GCTTAGGAATGAATACGCATACCTCTATTTTAATACTAAGTAGGCGTCTA
TAATTTCTAAAACACCTTACATATCAAN
NCCCACCGATGACATGGGAGGCCGGGNNGGTGCCCGGTCGNCATCGGGGG
GNGAANNANAGAATTTCGNGAGGGGGGGANCCNNNGGAACACAAGANAGN
AAGAGAGAACCGGAAACAGCCACCACAAGCCAGCACACAGAGAGAGAGAG
AGAGACAGAGAGAGACAGAGAGAGACAGAGACAGAGACAGAGACAGAGAG
ACAGGCACACACAAANCAGNCAAGCAGNACACGAAAAACAGAAAGGCACA
CTTTTACAGACACACACACACACACACACACACACCACAAACACACGTAA
ATCAGTCAACCAATACTTTTTTTTTAGAAAGAAACCCACACCGAAGCGCN
CANCCCGAGAATTTTCCCCCCAACANCNNNNGGGNAGGACCGCCGGCCCG
CCCGGCCGANAGAAAGCNCCCCGAGACAGGAGCCCGCCGGAGAGCCACAG
CCGGCCGGGAACNCACCCGGGAGACCAGGCGGACCCGGAACACAGAAAAC
CGCCAGCCACGGCCCCCAAAGCGCGGGGGCCAAAGGGGCGCGCCACCACC
GCCCAGCCNCCCCGAGACAACCNAAGAGCACAGGCACCANCCACAGGGAG
GAACAGCCCCGGAAGCACACCCCCAGAGAACGGGAGANCCCCGCATCTTT
TTTTCTGTGGAACGCACTCAACACACACATAAGAAGAGGATTCGTCAGAG
AGGCCCCTCACTCACTTCTGGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p08.b1 MSMg01no502_p08.b1 CHROMAT_FILE:
MSMg01no502_p08.b1 PHD_FILE: MSMg01no502_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:06 2005
         (282 letters)



>mm_chr15_12077960_12078637
          Length = 678

 Score =  511 bits (264), Expect = e-149
 Identities = 276/282 (97%), Gaps = 4/282 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggatcaaacttgtgaaagtctgtttggaaaacattactgagctgttttgtttttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tggggatcaaacttgtgaaagtctgtttggaaaacattactgagctgttttgtttttaac 419

                                                                       
Query: 61  ccaatagctttgaattacaaaagtactttcacaaatagactatatataagataaactgcc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 418 ccaatagctttgaattacaaaagtactttcataaatagactatatataagataaactgcc 359

                                                                       
Query: 121 catagttttaagaacttttatttattttttttgcttgtgtataacactggacagaaaata 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 358 catagttttaagaacttttattttttttttttgcttgtgtataacactggacagaaaata 299

                                                                       
Query: 181 ataacttaaaaaaatcattacacaagtctgattatagaattaatcaatctgcaaaactac 240
           |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 298 ataacttaaaaaaatcattacacaagtctgattatagaatt----aatctgcaaaactac 243

                                                     
Query: 241 tgcatgatagtagttctttataaaaagttatatttataaaat 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgcatgatagtagttctttataaaaagttatatttataaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 678
Length adjustment: 9
Effective length of query: 273
Effective length of database: 669
Effective search space:   182637
Effective search space used:   182637
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)