BAC Information

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BAC

Clone NameMSMg01-503A05
Chromosome15 (Build37)
Map Location 11,948,602 - 11,949,231
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1
Downstream geneLOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503A05.T7 (MSMg01no503_a05.b1)MSMg01-503A05.TJ (MSMg01no503_a05.g1)
ACCAG578230AG578231
length7141,112
length of high quality
(start - end)		630 (85 - 714)---
definitionCHROMAT_FILE: MSMg01no503_a05.b1 PHD_FILE: MSMg01no503_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:10 2005CHROMAT_FILE: MSMg01no503_a05.g1 PHD_FILE: MSMg01no503_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTTGTNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
AGAAGATCCGCGGAATTCACCATCTTTCCAACATTCCTCCATTAGATCTG
AAGTCACTCGATGCAGGGGTGCAGTCTGTAGTTTCTTCGTATATTGTGTA
CACAATACCGAAATGCTGTCAGTTTGGTTATGGGTGGAACCGCCTGCAAT
CAATCAGAGCCTACAGTGCAGTGGGGTAATGGGATGAAAACTCACTAAAG
CTGGCACGAAACATACAACTTTGGCTCACGGGTCCAGCCTTGCCATTTTA
TGTAGAGAAACGGGTAGGGTGCTTATTATTTGTTAGTGGCAAATATAATG
TCTGGCTCCCTGCTAGCCATCTTTCTGTTATGCTTGCTTATCTTGGCTGT
TGGACCCCAACCCGTGACCTCTCCAGAAGGGCTCCAAGCCCTCACATTAA
TGCATGCAGTAACTCTGGTGTGGGTCTACTTGGAGGATCCACTCTTTGCC
ATGAAGTAGCAGCGAGGTGATCAACAAGACACTAAGTAGGAGGGGCTCAT
GCTAACATTGGGATTATTTGAGGAGGGGGCCTGGGATTCCAGTGCAGTTG
TAGTCTGCACAAGATGGAGTAACTAGGCACACAGAGGCTGACACTGCTGA
CTCTCTATGGTGTTCAAGTCCAGATCTCTGCAAAGGTACTCCGTAGGGGG
GCTTGTCTGTCGGC

GTAATCGCTGAGTATAGAAGGTCGTCCGCACATCCGTTGCGGTTATTTCG
TACTCCCGTACTGCCGGAAGAACAAAACACCGGACATTATTACTTAGTTG
ATGTTGCGCGTTACCGCCTCGTCTGTTTATCAACCCCATGCAATTACGGT
GCCGGGACGAATCGCCCATAATCGGGCCGGATATTAGACAAACAGGAAGT
GCGAAATTGTGTGAGGGTACTCGTAGATCGCTGATACTATATTTAGACGA
CGTCTGCCTATTCACGCATTTCACCTTTGATGCCCGAGACGTTACTCTTT
GCTCTACGAGAAATCGACAATAACACATATCTGCGTATTTTTGCACGCCA
TCTCTTTACGCAGTACTTCGTTTTGTGGGCGTTCACACGTATTTCTGCTG
ATAACCCGCTTCGAGTGTTATTACGTTCTATCGATCTTATTACACGCGAG
GTATTCGTTCCGTTTAGTTTTTATAACCGACGTAGTGAGCGATAGGGGCT
GTGTTCGCGTCGCTATAACGAGCGCTACTTACATCTACTGAGGAATCGTT
AAATGCCGCCATCTTCACCTCCGCGCCCAGGTCGTGCTCCCCGCCATTCC
TTTGTCTACCCTAATATAGTATCTTAGTCATGTGTCCGCCGCATTACACC
CGTATATTTACAAAGATAGCGAACGAATCCGCGTCTTTGGCGAGGCGCGG
ACTGCACAACACCGGTATTATATCGCACACTTACCGTCNGACTTTGCATN
CGCATTACGTAGTGTTAACGACGTAATCAACATACGAGTGAATGGGACCA
TACCTACGCCCGCGCCCCACCGTTTGTTACGCATCCGTATATTAACACGT
TATTTCGACATAAACGGTCGCGACATCCAATAAAACTTTTCTCCCCGCGC
ATTCAATTTCGCTCCCTATTACCTCATACACATCGTTATGGTGAGCAGCT
CTAATCTGTTTTATTTTCCAATATACGCCGTTTATATCGCGCCCCTCTAA
ACGACTCGCCTCTTATCTAATTCAACCCTTATCTCTATTTATCGCGACAA
ATGAAGCTGATAGATGTGCGCATTACATCGCGCGCGACCCCTCTCTTTGT
TGTGCATAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_a05.b1 MSMg01no503_a05.b1 CHROMAT_FILE:
MSMg01no503_a05.b1 PHD_FILE: MSMg01no503_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:10 2005
         (630 letters)



>mm_chr15_11948402_11949431
          Length = 1030

 Score = 1187 bits (614), Expect = 0.0
 Identities = 626/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccattagatctgaagtcactcgatgcaggggtgcagtctgtagtttcttcgtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcctccattagatctgaagtcactcgatgcaggggtgcagtctgtagtttcttcgtatat 771

                                                                       
Query: 61  tgtgtacacaataccgaaatgctgtcagtttggttatgggtggaaccgcctgcaatcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tgtgtacacaataccgaaatgctgtcagtttggttatgggtggaaccgcctgcaatcaat 711

                                                                       
Query: 121 cagagcctacagtgcagtggggtaatgggatgaaaactcactaaagctggcacgaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cagagcctacagtgcagtggggtaatgggatgaaaactcactaaagctggcacgaaacat 651

                                                                       
Query: 181 acaactttggctcacgggtccagccttgccattttatgtagagaaacgggtagggtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acaactttggctcacgggtccagccttgccattttatgtagagaaacgggtagggtgctt 591

                                                                       
Query: 241 attatttgttagtggcaaatataatgtctggctccctgctagccatctttctgttatgct 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aagatttgttagtggcaaatataatgtctggctccctgctagccatctttctgttatgct 531

                                                                       
Query: 301 tgcttatcttggctgttggaccccaacccgtgacctctccagaagggctccaagccctca 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 530 tgcttatcttggctgttggaccccaacctgtgacctctccagaagggctccaagccctca 471

                                                                       
Query: 361 cattaatgcatgcagtaactctggtgtgggtctacttggaggatccactctttgccatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cattaatgcatgcagtaactctggtgtgggtctacttggaggatccactctttgccatga 411

                                                                       
Query: 421 agtagcagcgaggtgatcaacaagacactaagtaggaggggctcatgctaacattgggat 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 410 agtagcagcgaggtgatcaacaagacaccaagtaggaggggctcatgctaacattgggat 351

                                                                       
Query: 481 tatttgaggagggggcctgggattccagtgcagttgtagtctgcacaagatggagtaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatttgaggagggggcctgggattccagtgcagttgtagtctgcacaagatggagtaact 291

                                                                       
Query: 541 aggcacacagaggctgacactgctgactctctatggtgttcaagtccagatctctgcaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggcacacagaggctgacactgctgactctctatggtgttcaagtccagatctctgcaaa 231

                                         
Query: 601 ggtactccgtaggggggcttgtctgtcggc 630
           ||||||||||||||||||||||||||||||
Sbjct: 230 ggtactccgtaggggggcttgtctgtcggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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