Query= MSMg01no506_e07.b1 MSMg01no506_e07.b1 CHROMAT_FILE:
MSMg01no506_e07.b1 PHD_FILE: MSMg01no506_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:24 2005
(249 letters)
>mm_chr15_73118406_73119054
Length = 649
Score = 482 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 taggcttacagtgggctttctattactcgctactacatgaacctggccaagccacataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcttacagtgggctttctattactcgctactacatgaacctggccaagccacataag 260
Query: 61 taagtgcagagaggggtggtttcctcatctccacagaagggatattaataaacaaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtgcagagaggggtggtttcctcatctccacagaagggatattaataaacaaggcag 320
Query: 121 tactgtggatacgtcaggcataatccctaagcatgtgagtatgtatttgctaagcagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgtggatacgtcaggcataatccctaagcatgtgagtatgtatttgctaagcagcag 380
Query: 181 caaagcagcaatggacaacagactcagcatgcaagggttcacaagggaagagatgcagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagcagcaatggacaacagactcagcatgcaagggttcacaagggaagagatgcagag 440
Query: 241 atgattatc 249
|||||||||
Sbjct: 441 atgattatc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_e07.g1 MSMg01no506_e07.g1 CHROMAT_FILE:
MSMg01no506_e07.g1 PHD_FILE: MSMg01no506_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:25 2005
(611 letters)
>mm_chr15_73255350_73256361
Length = 1012
Score = 1125 bits (582), Expect = 0.0
Identities = 608/622 (97%), Gaps = 11/622 (1%)
Strand = Plus / Minus
Query: 1 actctgtagacctggctgcttcagcctcccaagtgctgggattaaaggcatgtgccacca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629 actctgtagacctggctgcttctgcctcccaagtgctgggattaaaggcatgtgccacca 570
Query: 61 atgcctggctgcggtcatggtgttttgacaaagtaact-------aagacacaatttgga 113
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 569 atgcctggctgcggtcatggtgttttgacaaagtaactaagacacaagacacaatttgga 510
Query: 114 ggtgcggactgtattcagctggacattactggtctttgaaggccccatgaggctgctatt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggtgcggactgtattcagctggacattactggtctttgaaggccccatgaggctgctatt 450
Query: 174 gact-aacatttggctggagctgggtggctcagcatagcctcgctcacaagcctagaggc 232
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gactgaccatttggctggagctgggtggctcagcatagcctcgctcacaagcctagaggc 390
Query: 233 tggcagcttgctgctagggtcccatgtggcttgcttaggaggccaactttcactcttttg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tggcagcttgctgctagggtcccatgtggcttgcttaggaggccaactttcactcttttg 330
Query: 293 tcagggttaagaagaaacagctttgggtatc---tgatcagcaccatgtcacctatgatg 349
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 329 tcagggttaagaagaaacagctttgggtatcctgtgatcagcaccatgtcacctatgatg 270
Query: 350 tatcattgtgatcaaagcaaagtatgagacttgtgcagattcaaggggtgaaaactcaga 409
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tatcactgtgatcaaagcaaagtatgagacttgtgcagattcaaggggtgaaaactcaga 210
Query: 410 ttctgcctcctgttgggaggcctgtcaaagactcggtgacccttttcagtccactgcaga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttctgcctcctgttgggaggcctgtcaaagactcggtgacccttttcagtccactgcaga 150
Query: 470 gtgctacctctcctcacaaagccatttttgatgcaaacccccttttgtgtcaccactcca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gtgctacctctcctcacaaagccatttttgatgcaaacccccttttgtgtcaccactcca 90
Query: 530 agcccctcccccctatccttctgatactttaaataataatctctcattttacaccatgca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 agcccctcccccctatccttctgatactttaaataataatctctcattttacaccatgca 30
Query: 590 aagcttcattcacccactcaac 611
||||||||||||||||||||||
Sbjct: 29 aagcttcattcacccactcaac 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
