BAC Information

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BAC

Clone NameMSMg01-506I19
Chromosome15 (Build37)
Map Location 10,402,138 - 10,403,005
singlet/doubletsinglet
Overlap genenone
Upstream geneIl7r, C230086A09Rik, Prlr, Agxt2, 4930461P20Rik
Downstream geneBxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I19.T7 (MSMg01no506_i19.b1)MSMg01-506I19.TJ (MSMg01no506_i19.g1)
ACCAG580917AG580918
length758758
length of high quality
(start - end)		680 (74 - 753)541 (75 - 615)
definitionCHROMAT_FILE: MSMg01no506_i19.b1 PHD_FILE: MSMg01no506_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:48 2005CHROMAT_FILE: MSMg01no506_i19.g1 PHD_FILE: MSMg01no506_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTTTCTGTATGCCATTAGCTTAATTGGCTTGAGAATGCAGTCATA
GGGTAGTATTTAGCCAACAGGTTTTTGGGGACTGGAGTAGTCTATATTAC
ATACATGATGAGATGTCTGTACATTTATTCCAATCTATTAGATGTCAAAA
TGGTATCCTAAAGCCTATGAAAACACATTAATAACTTTAAGATGGAATGT
TTACATACATCAGGTAGCTGTGGGTTCTATTTAATAATATATGGCAAAGA
CATTCATTGATAGCATCTTCTGTACTGGGAGCAACTAAACAGATAAAGGT
GACTGTCCTGTCCTTAATATCCTGCCCCCTACACAATCATAAAACCCAAC
TGAGCTTCAGCAGTTTCTCTACATATTAGATATCTAAGTCATTACTTAAA
TAGTTGCCTATTTTCTCCATCATTGAAATACAGAGTTAAACTGGATGTTA
TTTCAGTCATCTTCCATTGGTTGGTTTTGAGACTATGTAGTCGAAATTGG
TCTGGAACTTGCAGGTCTATAGTTGCAGCCAGTAGGTCTCTAGAGCTAGG
TAGGATTACAGGCATGAGTCATCGAATTCTGTTAAAAAAGCATTTTAATT
AAACATACTGATTTTGTATAAGTTATCTGTGAGTGAAAGGAATGCAATTT
GGGGAATAAAAAACCCAAATTAAACTGTTAATTTAAAACTATGACTAGAG
AATTAAAG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACATATGCCCGCTTTTATTGTGCA
AACCTTGCTCCTTAATTTTAAACTATTGGTTGACTAAAGATGCCTACAAC
CAGTAGCTAAGCAGGAGAGTAGGCAGGGCTTTGGTTTCCAGGGCTGGAGG
TCTGAAGCAGAGAGCACTAGAAGAGAAGGAGGGAAGAAGGAGCCATGGGG
TAGGTGAATCATGAGAGCGCATGACCATGAGGGCCAGCCCGTGGAGTAAG
AGTAGCCCAGGTAGAACATGGCTTGTGATATCTTGGGATTATTGACAGGG
AGATAGACAAAATAGCACAGAGGGTTGATATCTGCCCATCTCTAATGCTT
TAAAGTTTATTATAAATATAAAGGTTTTATGTCTTTTATTTAGGAAGTAA
ATGACGTAAGGTGGGGTAGAAACCGACAAATAATTTTTACCACAACAGCT
CAGACCTTGGTAAACTTACTAATTTGAGGCAGAACTACCCCCTACCTTTG
GCTCACTTTCTTTCTTTCTCTCTTCCTTCTCTTCTCTTCTCTTCTCTTCT
CTTCTCTTCTCTTATCTTANCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT
CTTCTCTCTTCCTTTCCTTTCCTTTCCTTTCCTTTTTTTTTTTTTGAGAC
AGGGTTTTTTCTGTGTATCCCTGGCCGCTCTTTTTCTCCCTCTGTTGTCT
TCTGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i19.b1 MSMg01no506_i19.b1 CHROMAT_FILE:
MSMg01no506_i19.b1 PHD_FILE: MSMg01no506_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:48 2005
         (680 letters)



>mm_chr15_10402127_10403206
          Length = 1080

 Score =  826 bits (427), Expect = 0.0
 Identities = 664/869 (76%), Gaps = 191/869 (21%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaattggcttgagaatgcagtcatagggtagtatttagccaacaggtttttggggact 60
           |||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| ||
Sbjct: 12  cttaattggcttgagaatacaatcatggggtagtatttagccaacagg-ttttgggggct 70

                                                                       
Query: 61  ggagtagtctatattacatacatgatgagatgtctgtacatttattccaatctattagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ggagtagtctatattacatacatgatgagatgtctgtacatttattccaatctattagat 130

                                                                       
Query: 121 gtcaaaatggtatcctaaagcctatgaaaacacattaataactttaagatggaatgttta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 131 gtcaaaatggtatcctaaagcctatgaaagcacattaataactttaagatggaatgttta 190

                                                                       
Query: 181 catacatcaggtagctgtgggttctatttaataatatatggcaaagacattcattgatag 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 191 catacatcaggtagctgtgggttctatttaataatatatagcaaagacattcattgatag 250

                                                                       
Query: 241 catcttctgtactgggagcaactaaacagataaaggtgactgtcctgtccttaatatcct 300
           ||||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 251 catcttcggtacagggagcaactaaacagataaaggtgacagtcctttccttaatatcct 310

                                                                       
Query: 301 gccccctacacaatcataaaacccaactgagcttcagcagtttctctacatattagatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gccccctacacaatcataaaacccaactgagcttcagcagtttctctacatattagatat 370

                                                                       
Query: 361 ctaagtcattacttaaatagttgcctattttctccatcatt------------------- 401
           |||||||||||||||||||||||||||||||||||||||||                   
Sbjct: 371 ctaagtcattacttaaatagttgcctattttctccatcatttgttaaggtggtaacggat 430

                                                                       
Query: 401 ------------------------------------------------------------ 401
                                                                       
Sbjct: 431 agggctggaaaagtttgggtttgcaagatacctaggatcttccttctcctgagaatggat 490

                                                                       
Query: 401 ------------------------------------------------------------ 401
                                                                       
Sbjct: 491 tagggggtggaggattttccccttcagccatgtgtacttgtttgtaaactctgcaaattt 550

                                                                       
Query: 402 ---------------------------------------------------gaaatacag 410
                                                              |||||||||
Sbjct: 551 ctttactgctttggggtgaaggtcatctattttggcccattacaatggattgaaatacag 610

                                                                       
Query: 411 agttaaactggatgttatttcagtcatcttccattggttggttttgagactatgtagtcg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agttaaactggatgttatttcagtcatcttccattggttggttttgagactatgtagtcg 670

                                                                       
Query: 471 aaattggtctggaacttgcaggtctatagttgcagccagtaggtctctagagctaggtag 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaattggtctggaacttgcaggtctatagttgcagccagtaggtctctagagctaggtag 730

                                                                       
Query: 531 gattacaggcatgagtcatcgaattctgttaaaaaagcattttaattaaacatactgatt 590
           |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct: 731 gattacaggcatgagtcaccaaattctgttaaaaaggcattttaattaaacatactgatt 790

                                                                       
Query: 591 ttgtataagttatctgtgagtgaaaggaatgcaatttggggaataaaaaacccaaattaa 650
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttgtataagtgatctgtgagtgaaaggaatgcaatttggggaataaaaaacccaaattaa 850

                                        
Query: 651 actgttaatttaaaactatgactagagaa 679
           |||||||||||||||||||||||||||||
Sbjct: 851 actgttaatttaaaactatgactagagaa 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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