Query= MSMg01no507_m17.b1 MSMg01no507_m17.b1 CHROMAT_FILE:
MSMg01no507_m17.b1 PHD_FILE: MSMg01no507_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:27 2005
(705 letters)
>mm_chr15_53454673_53455778
Length = 1106
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacattgatgtc-atacaactaatgtgagtaccactcctgctagtcatctacat 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaattcacattgatgtcaatacaactaatgtgagtaccactcctgctagtcatctacat 444
Query: 63 ctagtggccaaacaccaaccttctcatatttaatgagactgacatcctagaagatctgtt 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccagtggccaaacaccaaccttctcatatttaatgagactgacatcctagaagatctgtt 384
Query: 123 ttgaagtagccaaaataatgattagcctttctggctagtgcttaccatattgaatcctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgaagtagccaaaataatgattagcctttctggctagtgcttaccatattgaatcctca 324
Query: 183 aatagagaaatatgtgtttgtgcacattgtatacatttgtcaagtacttactaaggtgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatagagaaatatgtgtttgtgcacattgtatacatttgtcaagtacttactaaggtgaa 264
Query: 243 gtaaatcctgctgttatggttgtcaaaccagtctttaagtgcaccttgatcttaattagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtaaatcctgctgttatggttgtcaaaccagtctttaagtgcaccttgatcttaattagg 204
Query: 303 ctctgtggtaggcacttgaatatatgcacttcagacttttaaatcattttcttttcacat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctctgtggtaggcacttgaatatatgcacttcagacttttaaatcattttcttttcacat 144
Query: 363 catatattgtgaagtggcttcttctgcaattcccttttaatagacaagaaatgaagaatc 422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 143 catatattgtgaagtggcttcttctgtaattcccttttaatagacaagaaatgaagaatc 84
Query: 423 caagaatctgaaataaaatagtcaaagtcacacagtacgaaatgtattagataaagaaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 caagaatctgaaataaaatagtcaaagtcacacagtacgaaatgtattagataaagaaga 24
Query: 483 ccataactgtagttctctctagc 505
|||||||||||||||||||||||
Sbjct: 23 ccataactgtagttctctctagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_m17.g1 MSMg01no507_m17.g1 CHROMAT_FILE:
MSMg01no507_m17.g1 PHD_FILE: MSMg01no507_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:27 2005
(642 letters)
>mm_chr15_53314996_53316037
Length = 1042
Score = 1168 bits (604), Expect = 0.0
Identities = 631/640 (98%), Gaps = 3/640 (0%)
Strand = Plus / Plus
Query: 5 caaacaccagttgtttcattgt-tttaaaggtacagtactcataaatttataattctccc 63
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 204 caaacaccagttgtttcatt-tctttaaaggtacagtactcataaatttataattctccc 262
Query: 64 ccatgactggctggctaatgactctgcttatttcctgaagacaagaccttgtagtaacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccatgactggctggctaatgactctgcttatttcctgaagacaagaccttgtagtaacag 322
Query: 124 accaggacaaagagtaggacaaagaacaatggggaaaggggaagacagaggtcagacagg 183
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 accaggtcaaagagtaggacaaagaacaatggggaaaggggaagacagaagtcagacagg 382
Query: 184 gtcagtcctcagataagaggttaagaggttaatttctctggatcc-tttttaaaaaaaaa 242
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 383 gtcagtcctcagataagaggttaagaggttaatttctctggatcctttttttaaaaaaaa 442
Query: 243 ttaaatactacaatcaagttagaccaattcaatttctctacatgggaaaatatgtttctt 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaaatactacaatcaagttagacgaattcaatttctctacatgggaaaatatgtttctt 502
Query: 303 atttctattataaagttaactaatagtcaaatccctctacttcaaaatttcagttctggc 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 503 atttctattataaagttaactaatagtcaaatccctctatttcaaaatttcagttctggc 562
Query: 363 aatttcaataatctaagactgctgttggaaaaccctagcatctgaaggacaagtctggta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatttcaataatctaagactgctgttggaaaaccctagcatctgaaggacaagtctggta 622
Query: 423 caccatctgcattggaagtaaagttttattgaaacacagctgcatgcatctgtttaagta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caccatctgcattggaagtaaagttttattgaaacacagctgcatgcatctgtttaagta 682
Query: 483 ttgcctacagccactttgaaattacaatggaagagttaaatattggtacagaaactttgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgcctacagccactttgaaattacaatggaagagttaaatattggtacagaaactttgg 742
Query: 543 ctcttaagcttaaagttactgtctgcttctttataaatcagtgtgcagacctctgataaa 602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctcttaagcttgaagttactgtctgcttctttataaatcagtgtgcagacctctgataaa 802
Query: 603 actcaacctaacgctggcagtaaatgcgttagtgagaaaa 642
||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 actcaacctaacgctggcagtaaatgcgttagtgagaaaa 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
