Query= MSMg01no508_g01.b1 MSMg01no508_g01.b1 CHROMAT_FILE:
MSMg01no508_g01.b1 PHD_FILE: MSMg01no508_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:16 2005
(652 letters)
>mm_chr15_94671854_94672905
Length = 1052
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Minus
Query: 150 tgctgtgctttcttctcagtactcatggaggatggcctgagtctattctctaggaaacaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 tgctgtgctttcttctcagtactcatggaggatggcctgagtctattctctaggaaacaa 993
Query: 210 tttttctttcttatatctcccctcaggctttttcttttcttgtttgagtaattgttcctt 269
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 992 tttttctttcttatatctcccctcaggctttttcttttcttggctgagtaattgttcctt 933
Query: 270 tttggcttctttgtgattctaattttctaaacttttaattatctttattggtttcttgtg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tttggcttctttgtgattctaattttctaaacttttaattatctttattggtttcttgtg 873
Query: 330 catcccctgtaaatctctcccagcccactggagagtaatctaataacaagaaccgcatgc 389
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 catcccccgtaaatctctcccagcccactggagagtaatctaataacaagaaccgcatgc 813
Query: 390 atatgcatagatcagctacaggagcctcatttcctttggccaccaccatctccctcatag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atatgcatagatcagctacaggagcctcatttcctttggccaccaccatctccctcatag 753
Query: 450 agacattacagtgatcagatcaatgagggaaaagcacatagacaggtaaagaaaactaga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 agacattacagtgatcagatcaatgagggaaaagcacatagacaggtaaagaaaactaga 693
Query: 510 tgcatgtataggtataaattcagaggcagtagtacacatagtgcagagggtagtgcagga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgcatgtataggtataaattcagaggcagtagtacacatagtgcagagggtagtgcagga 633
Query: 570 aaatgggagggagaaacagaaagtgggaaccagacttggggctgctcgtgtgccacaatt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaatgggagggagaaacagaaagtgggaaccagacttggggctgctcgtgtgccacaatt 573
Query: 630 cccttttcctttcatctactggg 652
|||||||||||||||||||||||
Sbjct: 572 cccttttcctttcatctactggg 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_g01.g1 MSMg01no508_g01.g1 CHROMAT_FILE:
MSMg01no508_g01.g1 PHD_FILE: MSMg01no508_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:16 2005
(602 letters)
>mm_chr15_94489176_94490176
Length = 1001
Score = 1069 bits (553), Expect = 0.0
Identities = 589/601 (98%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 1 actctccaagttaccccacagcgggccccattctagaggagcaaacacagaggtcctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctccaagttaccccacagcgggccccattctagaggagcaaacacagaggtcctctt 260
Query: 61 gtgagagaagtcaccagtgcgtgcagcttaactggagaaaggtgcccctcaggcctcttc 120
|||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||
Sbjct: 261 gtgagagaagtcaccagtgcgtgcagcttaac-ggagagaggcgccccccaggcctcttc 319
Query: 121 ctcactttgcctgccatgtttggattctggaccgctctgcattgtattttaaggaacccg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 320 ctcactttgcctgccatgtttggattctggaccgttctgcattgtattttaaggagcccg 379
Query: 181 actccttcctgtagactctgtcttggcatggtttatacatgggctcggtttaatccaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 actccttcctgtagactctgtcttggcatggtttatacatgggctcggtttaatccatcc 439
Query: 241 cagatttacccaacccagataagtgctaattagttttttctgcatttgaggtagcctgct 300
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagatttatccaacccagatgagtgctaattagttttttctgcatttgaggtagcctgct 499
Query: 301 cctagcctctcagtgttgtcatgaataattgagagctgctggctcaccgagccaccctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctagcctctcagtgttgtcatgaataattgagagctgctggctcaccgagccaccctgc 559
Query: 361 tacagaagccactgcccagcccccaggaggctggcttcactgcagccagaatgacagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacagaagccactgcccagcccccaggaggctggcttcactgcagccagaatgacagagt 619
Query: 421 cccatctggcgagcccagtgtcacatgaagcttagtacgtgggcattaggaaagaaacct 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccatctggcgagcccagtgccacatgaagcttagtacgtgggcattaggaaagaaacct 679
Query: 481 gtgtgcatcgggatgcacagatgtgacctgtgtcagagtaaaaatcaaagcttccttcaa 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgtgcatcgggatgcacagatgtgccctgtgtcagagtaaaaatcaaagcttccttcaa 739
Query: 541 accactggagtctgtctgtagcgtttcttccagaaaaccggcttctcacttatacttcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 accactggagtctgtctgtagcgtttcttccagaaaaccggcttctcacttatacttcat 799
Query: 601 t 601
|
Sbjct: 800 t 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space: 586672
Effective search space used: 586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
