BAC Information

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BAC

Clone NameMSMg01-513H10
Chromosome15 (Build37)
Map Location 16,271,290 - 16,271,897
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513H10.T7 (MSMg01no513_h10.b1)MSMg01-513H10.TJ (MSMg01no513_h10.g1)
ACCAG586178AG586179
length755765
length of high quality
(start - end)
717 (39 - 755)608 (70 - 677)
definitionCHROMAT_FILE: MSMg01no513_h10.b1 PHD_FILE: MSMg01no513_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:58 2005CHROMAT_FILE: MSMg01no513_h10.g1 PHD_FILE: MSMg01no513_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TTTAACATGTATTCTATTTGACATGTATGCATTGGGAGTGGAATACATAA
CTTAGCAACTTAGTTCATTGGTTTTACTGTAACTATCTTATCCCTGCTAC
CCTAGAAGCTTCTTTGATGTGGGACAAGGACTACACTTATTTGTGAAGAA
AAGGACAAGGATTTAGAATGTAATTTGATATTTGGAGAACTAGCATAGTG
ATGGTTGTAGGTTCTTCTGCAAGATCATATTTCTGAGGAAGGAAAATTCC
AGGAGGACTCAACCCTACAGAGAACGATGGGGAACTAAGGGATGGTGAGA
ACAGAGAAATACTCTTCTCCAGGAAAGTGCATACCAATGAGAAATTCACT
ACTGAAAACATTCATTCATTCAAATAAAATTATGTAAAATATGGGCAGTA
AGGTGGAGAAATTGCAACGTATTCACATTTCTCAGGGACTAAAGCAGTGT
CATGACAGTGAGGGGCAGATGAATGAATCGTGACCAAGATGAGCATAAAA
TTGAAATCGTATGTCACAATTCCATGTTTAAATTCAACCTGAAATCCTTG
ACTGCATGGTCAAATACAAATTTGTACCCAGATGTTTATAATTGAGTTAT
TTATAATAACTAATAGATAGGAACAAGCCAAATTCACATGCTGCTGCTGC
TAAGAAGTTAAACACCAAACCTTAAACAGTTAAATGGGCTTTGTTTATAA
TGGAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGAAATTCTCAGGAAATAATGTTTTTATGC
AATACTATTTTCCTGCTATAATACAGAAAATAATATATATAATATTAATA
TAATGCATTATTAATTAATAATTACAAATATAATAATAATATAATGCATT
AATAGTAAAATTCATTAAGTAAATTCTCAAACTGGAATTTCATGTTGTAG
ACATAACAATAAAACATTATTAAAAGTGCTTCTTTACTGGAAAGTGTGAT
TATATTGCAGTAAAAATAATATTATAGACACAATGCAGTTCAATAAATAT
GAAGTCATATAATTTTTGGATAAGTACAATTCATATCTTTACATTTGTTG
AAATAAAAAATAAAAATCTCAGCTTCTCATAGTGCTGTCTAAAACTTTGC
ATGTTTCAACTTTATATGTGTCCAGAACTTTACAGTCAAAAAGGCTATTT
GATGATACAAAACCGTTGTGTTTAAATGATCTCAGACATTTGAGTGTTTA
TGAATAGTACATCAAATTGTCAGATGTGGCAAACGTGAGCAAATAGAATT
TTATTTCTACACTATATATATCTTTGCCTATCTAAGTTAGAAGTGTCCTA
CGGTTACCACCAGTGTGAAATTTCATCCTTTGACCAGGAAAACACTTCAA
ATATCTCTTGAAACAGTAGCTGTTTTATGGTGACGAGAGCATAATCACAT
TCAGTTTGTCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_h10.g1 MSMg01no513_h10.g1 CHROMAT_FILE:
MSMg01no513_h10.g1 PHD_FILE: MSMg01no513_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:58 2005
         (608 letters)



>mm_chr15_16271090_16272097
          Length = 1008

 Score = 1160 bits (600), Expect = 0.0
 Identities = 606/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaattctcaggaaataatgtttttatgcaatactattttcctgctataatacagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaattctcaggaaataatgtttttatgcaatactattttcctgctataatacagaaa 260

                                                                       
Query: 61  ataatatatataatattaatataatgcattattaattaataattacaaatataataataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatatataatattaatataatgcattattaattaataattacaaatataataataa 320

                                                                       
Query: 121 tataatgcattaatagtaaaattcattaagtaaattctcaaactggaatttcatgttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataatgcattaatagtaaaattcattaagtaaattctcaaactggaatttcatgttgta 380

                                                                       
Query: 181 gacataacaataaaacattattaaaagtgcttctttactggaaagtgtgattatattgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacataacaataaaacattattaaaagtgcttctttactggaaagtgtgattatattgca 440

                                                                       
Query: 241 gtaaaaataatattatagacacaatgcagttcaataaatatgaagtcatataatttttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaaaataatattatagacacaatgcagttcaataaatatgaagtcatataatttttgg 500

                                                                       
Query: 301 ataagtacaattcatatctttacatttgttgaaataaaaaataaaaatctcagcttctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagtacaattcatatctttacatttgttgaaataaaaaataaaaatctcagcttctca 560

                                                                       
Query: 361 tagtgctgtctaaaactttgcatgtttcaactttatatgtgtccagaactttacagtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgctgtctaaaactttgcatgtttcaactttatatgtgtccagaactttacagtcaa 620

                                                                       
Query: 421 aaaggctatttgatgatacaaaaccgttgtgtttaaatgatctcagacatttgagtgttt 480
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggctatttgatgatgcaaaactgttgtgtttaaatgatctcagacatttgagtgttt 680

                                                                       
Query: 481 atgaatagtacatcaaattgtcagatgtggcaaacgtgagcaaatagaattttatttcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaatagtacatcaaattgtcagatgtggcaaacgtgagcaaatagaattttatttcta 740

                                                                       
Query: 541 cactatatatatctttgcctatctaagttagaagtgtcctacggttaccaccagtgtgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactatatatatctttgcctatctaagttagaagtgtcctacggttaccaccagtgtgaa 800

                   
Query: 601 atttcatc 608
           ||||||||
Sbjct: 801 atttcatc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)