Query= MSMg01no513_k10.b1 MSMg01no513_k10.b1 CHROMAT_FILE:
MSMg01no513_k10.b1 PHD_FILE: MSMg01no513_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:13 2005
(581 letters)
>mm_chr15_83915214_83916198
Length = 985
Score = 897 bits (464), Expect = 0.0
Identities = 556/602 (92%), Gaps = 35/602 (5%)
Strand = Plus / Plus
Query: 5 gaattccgcctgagcaaccccggaaggcagagcagcctgccctgaactgagatgagggtt 64
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcctgagcaaccccagaaggcagagcagcctgccctgaactgagatgagggtt 264
Query: 65 agggagagcttggtctgggtgcatcaagtc-tgggtctccctcggacaaccacacagaca 123
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 265 agggagagcttggtctgggtgcatcaagtcctgggtctcccttggacaaccacacagaca 324
Query: 124 tgtgtctcgggatgcccacagccagctgtgtgcacagtggcagcagagctccaaacctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtctcgggatgcccacagccagctgtgtgcacagtggcagcagagctccaaacctgg 384
Query: 184 caaaggaattga----acaggaagtgaacagaagaaacgatgagaaacaagtcctgggct 239
||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 385 caaaggaat-gacaccacaggaagtgaacagaagaaacgatgagaaacaaggcctaggct 443
Query: 240 gaggcctgtgctgtgtgagaatctgtggcgtgcgagcatctgcagtcaggagatgggaaa 299
||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 444 gaggcctgtgctgtgtgagcatctgtggcatgcgagcatctgcagtcaggacatgggaaa 503
Query: 300 acagcaagagatgccggacgtggggctggagaggcagctcagcagttaacagcacttggt 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 acagcaagagatgccggacgtggggctggagaggcagcccagcagttaacagcacttggt 563
Query: 360 gctc---ca----ac--a--ta--------aacacatacaac-cattgtaagtggcttac 399
|||| || || | || |||| || ||| || |||||||||
Sbjct: 564 gctcttgcagaggacccaagtatggtttccaaca--ta-aacaca------gtggcttac 614
Query: 400 aaccattcctaactccagatccaataccttcttctgacctctttgggcaccagcatgcat 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaccattcctaactccagatccaataccttcttctgacctctttgggcaccagcatgcac 674
Query: 460 gcgctacacatacatacatgcaggcaaaaacaaaacaaaacaaaaaacccataaaataaa 519
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 675 gcgctacacatacatacatgcaggcaaaaacaaaacaaaacaaaaaactcataaaataaa 734
Query: 520 tctgagagaaggggaccatgggagatgagggtgttatcttggcagccaaatgaggaggga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctgagagaaggggaccatgggagatgagggtgttatcttggcagccaaatgaggaggga 794
Query: 580 ag 581
||
Sbjct: 795 ag 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 985
Length adjustment: 10
Effective length of query: 571
Effective length of database: 975
Effective search space: 556725
Effective search space used: 556725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_k10.g1 MSMg01no513_k10.g1 CHROMAT_FILE:
MSMg01no513_k10.g1 PHD_FILE: MSMg01no513_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:13 2005
(596 letters)
>mm_chr15_84047680_84048675
Length = 996
Score = 799 bits (413), Expect = 0.0
Identities = 422/425 (99%)
Strand = Plus / Minus
Query: 13 ggtaacgtgggaacttttgggatatttcccagatgttactgattttgggggggctgccct 72
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 425 ggtaacgtgggaacttttgggatatttcccagatgttactgattttcggggggctaccct 366
Query: 73 gaggcaagtcactggaacttgtgattcgttcaatagagaagaccctctgctcaaatcctc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggcaagtcactggaacttgtgattcgttcaatagagaagaccctctgctcaaatcctc 306
Query: 133 ccacacttgcatttaaggaagactgaatccctgcctgcttgccagggtcttggtatcgag 192
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccacacttgcatttaagggagactgaatccctgcctgcttgccagggtcttggtatcgag 246
Query: 193 gccctccactggcaactagcactggggttccaggacttggggatctggcagccatttgct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gccctccactggcaactagcactggggttccaggacttggggatctggcagccatttgct 186
Query: 253 tgaaaacaggaacatcgatcagcaagcatcaaggaaagcaaatgactgtgttcggtgcca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgaaaacaggaacatcgatcagcaagcatcaaggaaagcaaatgactgtgttcggtgcca 126
Query: 313 atagaaatgtgagctttcaagagaaattgggttggggcatttatatctgtcacactggca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atagaaatgtgagctttcaagagaaattgggttggggcatttatatctgtcacactggca 66
Query: 373 gtctcccagtctccaaggagctttatgacacaatcgacgatggtattaatgtcatctttt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gtctcccagtctccaaggagctttatgacacaatcgacgatggtattaatgtcatctttt 6
Query: 433 tattc 437
|||||
Sbjct: 5 tattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
