BAC Information

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BAC

Clone NameMSMg01-513O22
Chromosome15 (Build37)
Map Location 87,750,898 - 87,872,465
singlet/doubletdoublet
Overlap geneLOC100042329
Upstream geneLOC100042309, AW049604
Downstream geneLOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513O22.T7 (MSMg01no513_o22.b1)MSMg01-513O22.TJ (MSMg01no513_o22.g1)
ACCAG586536AG586537
length761777
length of high quality
(start - end)		670 (24 - 693)608 (65 - 672)
definitionCHROMAT_FILE: MSMg01no513_o22.b1 PHD_FILE: MSMg01no513_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:37 2005CHROMAT_FILE: MSMg01no513_o22.g1 PHD_FILE: MSMg01no513_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,750,898 - 87,751,551)(87,871,888 - 87,872,465)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCGTGTA
TTTGGCACGGTGTGGCCGTGGCTTGTGAGGACTCTAGGGCTGTGTGTGAT
CATTTCTTGGCCTTTAACACCCTCCCTGAATGAGGCATGCTGGGAACTCA
GGCACTGTTTCTGGGTACAGCAGCACCGAGGAGCTAACCTCAAGCCCAAT
AGGATCTGACCTCTCCCTTTGACTATCCCACTTGGCTTGGTTCTCCCAGA
GGCCAGGCTTGCCCATCACATGGCCAAAGCCCCACGTGTCTGCAGTTACT
CCTGGTCTCTCTTGACGATGTTCACCAGAGTCCTGATCTTTCTAGGGATG
CCTTTCTAGTCCCACCACAGGCGATGTAATCTGCCCCAAGAGTTCTATCA
TCAAGGCCTTCAGTCTGCATAGGAAGCCTCAGCATAGGACTGGGTCTCAA
GACTGTGCAGTGTCACTTCTGGTCCCCTTAATGAGGAGGGAGCTACCCTG
CCAGTGCTTCCAAGATCCACAGAGCCCAGTACTGAAAGGGTCTTGATGAT
GAATATGGTTGGTCACAGGCACATTTGGAATCTAGAATAAATATCATGAA
CTTACAGCTGTTCAGTGGCTAAGTGACTTTCAGGAGCCACTCGGAAGGAT
GACACTCAGCACACTATGTGTGAGTCACCTGGGTGTGCACGGTAGGAAGC
TGAAGCTGTGCATCAGCTCCTAGGTCCACAGAAACTTCTGGAAGCTGTCT
TGCTGCACCTG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCGTCATGGATAGTGGAAATCTGAGAGCCACATCT
TCCAGTCTGTCACCTACAGCTATTCTGACCAGAGCATAAAGGACCTGTTA
GATCTATTTACATTCTGCCCAGAGTACAGAGATCTATTTACACTAGATGC
CAGCTTCATGTGAGTTCTACCTCTTCAGCTTTGTAGTTTAGAGTTGATAA
GGTTTCCATTTCCCCATGGCAAGGGCTCAATCTTGGATTCTATTATCACA
TTCTGCATTTTCTGAGCATCCCGGGTACTCTGAATGGAGGATGGATGGAT
GCAAATGAAATGCAAGCAAATGGGCATCTTCCTCTAGGAGTTCCCAGCCC
TTAAGAAACCTGGCAAAAATAAAAATGCCATGGTACCACTGCGTGGGACC
GTGAAAAGTAGCCTTGTTCCCGGTTGAACAACTCTCAAAGGCTCAAAACT
TTGGTGATCCTGAGGGACAATAGCACTTCACCTGGTTTCCGGGCACCAGG
CCCTTGTCACTAGCCGCAGCTCCCCATAGATTTGTGTCCTTCAGTCACAT
ATAAGGGCAACGCCCCAAGCCACTTGCAGAGCACAAGACCTATGGTCACA
TAGGCTCAAGACAGATCTCCATGCAATTAAGGTACCTAAGGCCTGGAGGA
CTTAGCCAATAAGCTTTCCTTCCCAGACACTCCTCCCTGCAAAAGGTATT
TTACCTCAGGACCACTCTGAGAAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_o22.b1 MSMg01no513_o22.b1 CHROMAT_FILE:
MSMg01no513_o22.b1 PHD_FILE: MSMg01no513_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:37 2005
         (670 letters)



>mm_chr15_87750682_87751751
          Length = 1070

 Score = 1180 bits (610), Expect = 0.0
 Identities = 643/654 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcgtgtatttggcacggtgtggccgtggcttgtgaggactctagggctgtgtgtga 76
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcgtgtaggtggcacggtgtggccgtggcttgtgaggactctagggctgtgtgtga 276

                                                                       
Query: 77  tcatttcttggcctttaacaccctccctgaatgaggcatgctgggaactcaggcactgtt 136
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcatttcttggccttcaacaccctccctgaatgaggcatgctgggaactcaggcactgtt 336

                                                                       
Query: 137 tctgggtacagcagcaccgaggagctaacctcaagcccaataggatctgacctctccctt 196
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 337 tctgggtacagcagcactgaggagctaatctcaagcccaataggatctgacctctccctt 396

                                                                       
Query: 197 tgactatcccacttggcttggttctcccagaggccaggcttgcccatcacatggccaaag 256
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 tgactatcccacttggcttggttctcccagaggccaggcttgcccatcacatagccaaag 456

                                                                       
Query: 257 ccccacgtgtctgcagttactcctggtctctcttgacgatgttcaccagagtcctgatct 316
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 457 ccccacgtgtctgcagttactcctggtccctcttgacgatgttcaccagagtcctgatct 516

                                                                       
Query: 317 ttctagggatgcctttctagtcccaccacaggcgatgtaatctgccccaagagttctatc 376
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 517 ttctagggatgcctttctagtcccaccacaggcgatgtaatctgcccccagagttctatc 576

                                                                       
Query: 377 atcaaggccttcagtctgcataggaagcctcagcataggactgggtctcaagactgtgca 436
           | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agcaaggtcttcagtccgcataggaagcctcagcataggactgggtctcaagactgtgca 636

                                                                       
Query: 437 gtgtcacttctggtccccttaatgaggagggagctaccctgccagtgcttccaagatcca 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtgtcacttctggtccccttaatgaggagggagctaccctgccagtgcttccaagatcca 696

                                                                       
Query: 497 cagagcccagtactgaaagggtcttgatgatgaatatggttggtcacaggcacatttgga 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cagagcccagtactgaaagggtcttgatgatgaatatggttggtcacaggcacatttgga 756

                                                                       
Query: 557 atctagaataaatatcatgaacttacagctgttcagtggctaagtgactttcaggagcca 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atctagaataaatatcatgaacttacagctgttcagtggctaagtgactttcaggagcca 816

                                                                 
Query: 617 ctcggaaggatgacactcagcacactatgtgtgagtcacctgggtgtgcacggt 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctcggaaggatgacactcagcacactatgtgtgagtcacctgggtgtgcacggt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_o22.g1 MSMg01no513_o22.g1 CHROMAT_FILE:
MSMg01no513_o22.g1 PHD_FILE: MSMg01no513_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:37 2005
         (608 letters)



>mm_chr15_87871888_87872895
          Length = 1008

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgtcatggatagtggaaatctgagagccacatcttccagtctgtcacctacagctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atcgtcatggatagtggaaatctgagagccacatcttccagtctgtcacctacagctatt 519

                                                                       
Query: 61  ctgaccagagcataaaggacctgttagatctatttacattctgcccagagtacagagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctgaccagagcataaaggacctgttagatctatttacattctgcccagagtacagagatc 459

                                                                       
Query: 121 tatttacactagatgccagcttcatgtgagttctacctcttcagctttgtagtttagagt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatttacactaggtgccagcttcatgtgagttctacctcttcagctttgtagtttagagt 399

                                                                       
Query: 181 tgataaggtttccatttccccatggcaagggctcaatcttggattctattatcacattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgataaggtttccatttccccatggcaagggctcaatcttggattctattatcacattct 339

                                                                       
Query: 241 gcattttctgagcatcccgggtactctgaatggaggatggatggatgcaaatgaaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcattttctgagcatcccgggtactctgaatggaggatggatggatgcaaatgaaatgca 279

                                                                       
Query: 301 agcaaatgggcatcttcctctaggagttcccagcccttaagaaacctggcaaaaataaaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 agcaaatgggcatcttcctctaggagtttccagcccttaagaaacctggcaaaaataaaa 219

                                                                       
Query: 361 atgccatggtaccactgcgtgggaccgtgaaaagtagccttgttcccggttgaacaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgccatggtaccactgcgtgggaccgtgaaaagtagccttgttcccggttgaacaactc 159

                                                                       
Query: 421 tcaaaggctcaaaactttggtgatcctgagggacaatagcacttcacctggtttccgggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tcaaaggctcaaaactttggtgatcctgagggacaatagcacttcacctggtttccgggc 99

                                                                       
Query: 481 accaggcccttgtcactagccgcagctccccatagatttgtgtccttcagtcacatataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  accaggcccttgtcactagccgcagctccccatagatttgtgtccttcagtcacatataa 39

                                                 
Query: 541 gggcaacgccccaagccacttgcagagcacaagaccta 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  gggcaacgccccaagccacttgcagagcacaagaccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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