BAC Information

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BAC

Clone NameMSMg01-514G09
Chromosome15 (Build37)
Map Location 73,521,702 - 73,522,321
singlet/doubletsinglet
Overlap genenone
Upstream gene1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4
Downstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514G09.T7 (MSMg01no514_g09.b1)MSMg01-514G09.TJ (MSMg01no514_g09.g1)
ACCAG586893AG586894
length797731
length of high quality
(start - end)
184 (67 - 250)620 (84 - 703)
definitionCHROMAT_FILE: MSMg01no514_g09.b1 PHD_FILE: MSMg01no514_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005CHROMAT_FILE: MSMg01no514_g09.g1 PHD_FILE: MSMg01no514_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGA
ATCACTTTGTTCACCAGGCTGCTCTCGGACTCAGAAATCCGCCTGCCTCT
GCCTCTCAAGTACTGGGATTAAAGGCGTGCACCACCACTGCCTGGCTTTG
GGGGTTTTTTTTTAGAAACATTTATTATTTTAAATTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGATATA
ATGAATGATTGAATGAATGAATTTTTTATTTATTGTTTGTTTTTTTATTG
TATTTTGTTTTTTATTTTTTTTTTTTTTTCTGTTATTTTTTTTTATATTA
TTGTTGTTTTTTTTATTTTTTGTTTATTTGTTTGAGTGTTTCGAATATGC
TTTTATTTTATTTATTTGTTGTCCCCCACCCTTACATCTTTTACTTCCTC
TTTATTCCTATCTTTGTTCCTCTACTTTTTTTTTTCTTTCCTCTTCCCTT
GTATTTTTTTCCTTTACTATTCTTTTATTCCTTTTTTCCAACTTTTTTTC
CTTTTATTTTTCCTTTTTTTTTTCTATCATTTTCCTGTCTTCTTTTTTCT
TTTCCCCTTTCCTTTTTCTTCTTTTTATCACCTCTCTTTTTCGTACTCCC
CATTTTTCTTTGTTTTAATTCTTTTCTTAACCTTCTTCTCTTACTATTCT
TATTCTAATTTTTTTCTTTTTCGCTCCTTCCACCTTTCTTTCTCCTTTTT
TTTCTCCTCTTTTTATTCATCCTCCTCATTCTTACACTATATTTTCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTCCACACCCATGC
TCCCAAGCTCAAGGCCATCTTCTGGAGTGGGAGGGCTGGGCCTGCCACTG
CTTCCTGAACCTCACTCTCACTTCCTAGGGGGATCCTGGAAGCTGGGTAC
GAACTAGGGAAGGAGACATCACCTGGCTGGTTGTAGTACCACCACATATC
CTCTGGGCTCGGCTCTCTTCTCAGAGGGGAAAAGTGAGGTTGGAAAAAGG
AGATAAGGCAGTGTCCTCCAGTGTTACTCAAGGACCAGACTGGAACTCTT
CACACAGACCATGCCACAGCCAGGACCCACATACACAGGAGCCGCTGAAA
ATGTGTGTCTGGCCAAGAAGGCAGAGAGCTATATCCCCTGAATGCCAGCA
AGGGTCACTTGGCCTCAGAGCGAGAATAGGGCAGAAAAGGTGAGAAGGCT
CCTCCTACTTCCAAATCACATTCCTCTCTTGGGTACATCTTCCCTATTCC
AGAGTCCACAGGGCCTCATGGCCTAGGAAGACCCCTAGATTATTCAGTCC
ACAGTGCTTCCCTGCCTGCCTGTGGCCCCTCCCTCTGCCTCTACCCCATC
TCAAGACGGTTCTACTCACAATATTGCCAATACCTCCCAACACTTATTCG
CCTGGGGACCACCTCCCTCCTTTGCCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_g09.g1 MSMg01no514_g09.g1 CHROMAT_FILE:
MSMg01no514_g09.g1 PHD_FILE: MSMg01no514_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:17 2005
         (620 letters)



>mm_chr15_73521502_73522521
          Length = 1020

 Score = 1129 bits (584), Expect = 0.0
 Identities = 611/620 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctccacacccatgctcccaagctcaaggccatcttctggagtgggagggctgggcct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 820 accctccacacccatgctcccaagctcaaggccatcttctagagtgggagggctgggcct 761

                                                                       
Query: 61  gccactgcttcctgaacctcactctcacttcctagggggatcctggaagctgggtacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gccactgcttcctgaacctcactctcacttcctagggggatcctggaagctgggtacgaa 701

                                                                       
Query: 121 ctagggaaggagacatcacctggctggttgtagtaccaccacatatcctctgggctcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctagggaaggagacatcacctggctggttgtagtaccaccacatatcctctgggctcggc 641

                                                                       
Query: 181 tctcttctcagaggggaaaagtgaggttggaaaaaggagataaggcagtgtcctccagtg 240
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 640 tctcttctcataggggaaaagtgaggttggaaaaaggagataaggcagtgccctccagtg 581

                                                                       
Query: 241 ttactcaaggaccagactggaactcttcacacagaccatgccacagccaggacccacata 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttacccaaggaccagactggaactcttcacacagaccatgccacagccaggacccacata 521

                                                                       
Query: 301 cacaggagccgctgaaaatgtgtgtctggccaagaaggcagagagctatatcccctgaat 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 520 cacaggagccgctgaaaatgtgtgtctggccaaggaggcagagagctatatcccctgaat 461

                                                                       
Query: 361 gccagcaagggtcacttggcctcagagcgagaatagggcagaaaaggtgagaaggctcct 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 gccagcaagggtcacttggcctcagagtgagaatagggcagaaaaggtgagaaggctcct 401

                                                                       
Query: 421 cctacttccaaatcacattcctctcttgggtacatcttccctattccagagtccacaggg 480
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 400 ccgactcccaaatcacattcctctcttgggtacatcttccctattccagagtccacagga 341

                                                                       
Query: 481 cctcatggcctaggaagacccctagattattcagtccacagtgcttccctgcctgcctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cctcatggcctaggaagacccctagattattcagtccacagtgcttccctgcctgcctgt 281

                                                                       
Query: 541 ggcccctccctctgcctctaccccatctcaagacggttctactcacaatattgccaatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggcccctccctctgcctctaccccatctcaagacggttctactcacaatattgccaatac 221

                               
Query: 601 ctcccaacacttattcgcct 620
           ||||||||||||||||||||
Sbjct: 220 ctcccaacacttattcgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)