BAC Information

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BAC

Clone NameMSMg01-518E11
Chromosome15 (Build37)
Map Location 27,505,044 - 27,687,017
singlet/doubletdoublet
Overlap geneAnk, BC087945, LOC100040622, BC052328, Trio
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518E11.T7 (MSMg01no518_e11.b1)MSMg01-518E11.TJ (MSMg01no518_e11.g1)
ACCAG589825AG589826
length750750
length of high quality
(start - end)
546 (49 - 594)622 (79 - 700)
definitionCHROMAT_FILE: MSMg01no518_e11.b1 PHD_FILE: MSMg01no518_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:38 2005CHROMAT_FILE: MSMg01no518_e11.g1 PHD_FILE: MSMg01no518_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,686,684 - 27,687,017)(27,505,044 - 27,505,665)
sequence
AATCCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATATTCTTTTTCTCCTCTTAAACTTTGGGTTTCCACTGT
GTGTCTGCACCGCCAGTGGTGTGTCTAGTCTTGAGATGACAAGCTTGCTT
CATCTGTGCTCAAGAGAATTTCCACCAGCCTCCGGAGTAAGAAGAATTGC
AGAGTGTCCATCATTCTGTCAGGTTCAGCTGGTGGTTCACAGCAAGCATG
TCTGTGGAGCTTACATCACTCACAAGTGCTTTTCCCCCAGGCAGTTACTA
AAGAAGCAGAAGGGTTGTGTAGACCTCTGCCCCGACTCGAGACCACTAAA
AAGATCTGTGTGCCGTATTGAGGTTTTAAGGGGATGAGTGACTTGTATTA
CGTCATCAGTGGCATCCAGAAGGGAAACTGGCATGTTCCACAGCAGGTTT
GCAGTGGTGACAGATCCTTGCTGTGATGCCAGCCATTCCCCCCACTGTGG
GCCCATGCCACGTTGGCACACGCATAGACACTGAAGGAGGGCAATGGTAT
CCTAGTGTTGTTTGAAAGAGATTTTTGACCTAAGAGAACCTCATATAGGC
CCCAGGGACCCTAAAGGGTCTGCATACATAGCTTTGAGAGCCTGTTGCCC
CTTTTTTTCCTGCCATGGGATCTGAGATTATTAAGACTTACTAAAGACAG
TACTGGCTGCCTGGGCGCGATGGAAGCGTCTTCTTGAGTTGTCGTTGGTG

GCTCATTGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCATTAATTCAAATCTCGT
TTGGGGATCCCTTCTCCTTTGAACTCTTCCTGACTCAACAAATCGTGGGT
GAACAGAGGATCTCTAACAGCTTCGGCTGCTAACAGTAGACTGGCCTCCA
TCTGACCTCACAAATGGCCCTTTAAGAGCACTGGGCATTTCTCTTTTTAG
ATTCTCCACTGCTTTAGTTTTGGGGAGCTGGTGCCAAGAACAGGGCCCCT
CTTCTCCAGGAGAAGTGGAAAAGAATCTATGCAAAGCACGGACGTGGCTG
ACTCGGGGGCCTTCTCTGGCCCCTTTGTACACAGTGGAGAGAGGCAACGA
TCCAAATGGATCTTGGCAGGTGGAGCTGGCAAGGCACTTCTGGGCAGTGG
ACAACCTACGCAGCCATCCCAACACCCCCTGAATTCCAGACCCTGTGAAA
GTCAGACACTTAGAAAGCAAGGATCACGGGGAAGAGACAGTGGAGAGGGT
AAGACAGTGAGAGGGAGGAACGGTCGATTTGTCAGAGACGGGAGGTTGCC
ATGGGAAGACGGACAGAATGACAGAGGTATAGGTGTGCATAAAACAGCAG
GGTGAGGAGCCCCCAAACCAGAAAGCTCTCCCCCACTCCCTGGGATGCTG
TGAGCCTTTCCAGTACAGGTTGTGAACATCAGAAGAATTTCTGCAGATGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_e11.b1 MSMg01no518_e11.b1 CHROMAT_FILE:
MSMg01no518_e11.b1 PHD_FILE: MSMg01no518_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:38 2005
         (546 letters)



>mm_chr15_27686072_27687017
          Length = 946

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 212 cttacatcactcacaagtgcttttcccccaggcagttactaaagaagcagaagggttgtg 271
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cttacatcagtcacaagtgcttttcccccaggcagttactaaagaagcagaagggttgtg 887

                                                                       
Query: 272 tagacctctgccccgactcgagaccactaaaaagatctgtgtgccgtattgaggttttaa 331
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 886 tagacctctgccccgactcgagaacactaaaaggatctgtgtgccgtattgaggttttaa 827

                                                                       
Query: 332 ggggatgagtgacttgtattacgtcatcagtggcatccagaagggaaactggcatgttcc 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggggatgagtgacttgtattacgtcatcagtggcatccagaagggaaactggcatgttcc 767

                                                                       
Query: 392 acagcaggtttgcagtggtgacagatccttgctgtgatgccagccattccccccactgtg 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acagcaggtttgcagtggtgacagatccttgctgtgatgccagccattccccccactgtg 707

                                                                       
Query: 452 ggcccatgccacgttggcacacgcatagacactgaaggagggcaatggtatcctagtgtt 511
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 706 ggcccatgccacgttggcacacgcatagacactgcaggagggcaatggtatcctagtgtt 647

                                             
Query: 512 gtttgaaagagatttttgacctaagagaacctca 545
           ||||||||||||||||||||||||||||||||||
Sbjct: 646 gtttgaaagagatttttgacctaagagaacctca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no518_e11.g1 MSMg01no518_e11.g1 CHROMAT_FILE:
MSMg01no518_e11.g1 PHD_FILE: MSMg01no518_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:38 2005
         (622 letters)



>mm_chr15_27504844_27505865
          Length = 1022

 Score = 1118 bits (578), Expect = 0.0
 Identities = 611/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcattaattcaaatctcgtttggggatcccttctcctttgaactcttcctgactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcattaattcaaatctcgtttggggatcccttctcctttgaactcttcctgactcaa 260

                                                                       
Query: 61  caaatcgtgggtgaacagaggatctctaacagcttcggctgctaacagtagactggcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatcgtgggtgaacagaggatctctaacagcttcggctgctaacagtagactggcctc 320

                                                                       
Query: 121 catctgacctcacaaatggccctttaagagcactgggcatttctctttttagattctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctgacctcacaaatggccctttaagagcactgggcatttctctttttagattctcca 380

                                                                       
Query: 181 ctgctttagttttggggagctggtgccaagaacagggcccctcttctccaggagaagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctttagttttggggagctggtgccaagaacagggcccctcttctccaggagaagtgg 440

                                                                       
Query: 241 aaaagaatctatgcaaagcacggacgtggctgactcgggggccttctctggcccctttgt 300
           |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 441 aaaagaatctatgcaaagcagggacttggctgacttgggggccttctctggcccctttgt 500

                                                                       
Query: 301 acacagtggagagaggcaacgatccaaatggatcttggcaggtggagctggcaaggcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagtggagagaggcaacgatccaaatggatcttggcaggtggagctggcaaggcact 560

                                                                       
Query: 361 tctgggcagtggacaacctacgcagccatcccaacaccccctgaattccagaccctgtga 420
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||
Sbjct: 561 tctgggcagtggacaacctacgcagccatcccaacaccccctgaatgccagaccccatga 620

                                                                       
Query: 421 aagtcagacacttagaaagcaaggatcacggggaagagacagtggagagggtaagacagt 480
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||  ||
Sbjct: 621 aagtcagacacttagaaagcaaggatcatggggaggagacagtggagagggtaagatggt 680

                                                                       
Query: 481 gagagggaggaacggtcgatttgtcagagacgggaggttgccatgggaagacggacagaa 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 gagagggaggaacggtcgatttgtcagagacgggaggttgccacgggaagacggacagaa 740

                                                                       
Query: 541 tgacagaggtataggtgtgcataaaacagcagggtgaggagcccccaaaccagaaagctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgacagaggtataggtgtgcataaaacagcagggtgaggagcccccaaaccagaaagctc 800

                                 
Query: 601 tcccccactccctgggatgctg 622
           ||||||||||||||||||||||
Sbjct: 801 tcccccactccctgggatgctg 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)