BAC Information

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BAC

Clone NameMSMg01-518F17
Chromosome15 (Build37)
Map Location 81,278,985 - 81,279,654
singlet/doubletsinglet
Overlap geneXpnpep3
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Dnajb7
Downstream geneRbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F17.T7 (MSMg01no518_f17.b1)MSMg01-518F17.TJ (MSMg01no518_f17.g1)
ACCAG589885AG589886
length750760
length of high quality
(start - end)		674 (49 - 722)605 (78 - 682)
definitionCHROMAT_FILE: MSMg01no518_f17.b1 PHD_FILE: MSMg01no518_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:44 2005CHROMAT_FILE: MSMg01no518_f17.g1 PHD_FILE: MSMg01no518_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAACTCTTGGTCTGTGGAGATAGGAGGATCAAGAATCCAGAG
CCATCCTCAGCTGCTGAGTTCAAGGCAAGCCTGGGTTACACGAGAACTTG
TCCCCACCATAAATGCAATAAAAAAGACATACATCTCTCCTGGGTAGCCT
ACTCTACCCATGTCAAGTTGTAGAGTAGGCAGGACTCTGTGTTTACTGGT
ATGGATAGTTCTGTTAATTAAAAATTTGTTGGCTTGGTTCAGGGAATTTA
TAACTTCTTTTCTTTGGTAATAGGAGTCCTGGAAGTGTAAATTTGGAAAT
GGAGGCTGCCTAATGCTTGTGTGGCTCAGGGTCTGCAACTATAATGGATG
TCATACATTTAGGTGTAGACAAAACTGGGCGTTTTGTAAAGTTTCAATAG
TGTAACTGAGCCAATAAACAGCCTCCCTTCTGACCTCCAGAACCCCAGCA
AAGGATTAGGAGTTAACCCTCTCTCCTTGTTTGTGTTCTTCCCACTCTCT
GCCTGTATAGACTTAATCTTGTGTCTGAGTACTGCACTGGCTCTCTAGCA
GGCAATGACTCAGAATGTGCTGCCATCTTCTGGCAAAAAGAAGTACTGAC
TCCCTTTGTTTTAATCCAATCCATGTTAAAGCTAAATCCACTTTACAAAG
AATTAGCTTTTCCAAGCAGGGCAAAAACTGAGCAGCATGTTGCTGGCCCT


NCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGCACTTGCACCATGTAGG
CAAAACACTCAGAAATATAAAATGAATACTAAAAGCTGAGTGTAGTGGAA
CATGCTTTTAATCCCAGCACTCAAGAGGTAATGGAAGACAGATAGATCTC
TGAGTTCATAGCCAACCTGGCCTACAGAGCTAGTTCTAGGATAGCCATGG
CTACACAGAGAAACCCTGTCTCAAAAAACCAATAGATAAATAAATACTAT
ATAAAAACAGAGTCAAGAGTGGTTTCTGTTCTTCAGAGGATCCGAGTTTG
GTTCCTAGCACCTGTGTCACATGGCACACAACCACCTGTAACTCCAACTC
CAGAGGATCTCTCTTCTGGCCTCCTTGGGCATCAACACACAGGTACACAT
GTGTGCATGCACACCCCCACCACAAGCTTTTAAAAAGAAAAAAATAACAG
GTAACCTTCCATAGACATGCCCATGGGCCAAACTGATGTCAACAATCCCT
CCCTGAGGCTCCTTTCCCAGAATCTAGAACCCTAGCCTATGTCAAGTTGA
CAAAGCATCAATCCAGGTGACCCATTTGCTCCTTAAAGCCAGGCCTGGTT
CTATGGAGCCTACATTGGCCTTCCTTCTTTAGAAGATCATGTGATTTAAA
TGATACCTCCAAGTAGTTGTTTGGCCTCCTCTTTCTGCATGTCAGTGTCC
TCTTAGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f17.b1 MSMg01no518_f17.b1 CHROMAT_FILE:
MSMg01no518_f17.b1 PHD_FILE: MSMg01no518_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:44 2005
         (674 letters)



>mm_chr15_81278679_81279752
          Length = 1074

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaactcttggtctgtggagataggaggatcaagaatccagagccatcctcagct 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gaatcctaactcttggtctgtggagataggaggatcaagaatccagagccatcctcagct 917

                                                                       
Query: 65  gctgagttcaaggcaagcctgggttacacgagaacttgtccccaccataaatgcaataaa 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 916 gctgagttcaaggcaagcctgggttacacaagaacttgtccccaccataaatgcaataaa 857

                                                                       
Query: 125 aaagacatacatctctcctgggtagcctactctacccatgtcaagttgtagagtaggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aaagacatacatctctcctgggtagcctactctacccatgtcaagttgtagagtaggcag 797

                                                                       
Query: 185 gactctgtgtttactggtatggatagttctgttaattaaaaatttgttggcttggttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gactctgtgtttactggtatggatagttctgttaattaaaaatttgttggcttggttcag 737

                                                                       
Query: 245 ggaatttataacttcttttctttggtaataggagtcctggaagtgtaaatttggaaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaatttataacttcttttctttggtaataggagtcctggaagtgtaaatttggaaatgg 677

                                                                       
Query: 305 aggctgcctaatgcttgtgtggctcagggtctgcaactataatggatgtcatacatttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggctgcctaatgcttgtgtggctcagggtctgcaactataatggatgtcatacatttag 617

                                                                       
Query: 365 gtgtagacaaaactgggcgttttgtaaagtttcaatagtgtaactgagccaataaacagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgtagacaaaactgggcgttttgtaaagtttcaatagtgtaactgagccaataaacagc 557

                                                                       
Query: 425 ctcccttctgacctccagaaccccagcaaaggattaggagttaaccctctctccttgttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcccttctgacctccagaaccccagcaaaggattaggagttaaccctctctccttgttt 497

                                                                       
Query: 485 gtgttcttcccactctctgcctgtatagacttaatcttgtgtctgagtactgcactggct 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 gtgttcttcccactctctgcctgtatagacttcatcttgtgtctgagtactgcactggct 437

                                                                       
Query: 545 ctctagcaggcaatgactcagaatgtgctgccatcttctggcaaaaagaagtactgactc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctctagcaggcaatgactcagaatgtgctgccatcttctggcaaaaagaagtactgactc 377

                                                                       
Query: 605 cctttgttttaatccaatccatgttaaagctaaatccactttacaaagaattagcttttc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cctttgttttaatccaatccatgttaaagctaaatccactttacaaagaattagcttttc 317

                     
Query: 665 caagcagggc 674
           ||||||||||
Sbjct: 316 caagcagggc 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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