Query= MSMg01no518_j14.b1 MSMg01no518_j14.b1 CHROMAT_FILE:
MSMg01no518_j14.b1 PHD_FILE: MSMg01no518_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:03 2005
(685 letters)
>mm_chr15_84068183_84069268
Length = 1086
Score = 1228 bits (635), Expect = 0.0
Identities = 674/687 (98%), Gaps = 3/687 (0%)
Strand = Plus / Minus
Query: 1 gtgctcctaaggatcactggatgtgatggctgattgactttctggggaaacccgggacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gtgctcctaaggatcactggatgtgatggctgattgactttctggggaaacccgggacca 827
Query: 61 gtaggcagcagaatcgtggtgttagaatagaagaaaaggcctaggtctgagaggtagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtaggcagcagaatcgtggtgttagaatagaagaaaaggcctaggtctgagaggtagaga 767
Query: 121 tggaaagaggcgaacttctcagggccaagaggcaccttttattttattttttttagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tggaaagaggcgaacttctcagggccaagaggcaccttttattttattttttttagctga 707
Query: 181 agcctggttttttgaagtcttaagaggcggccaagaaaagcacccactaccgatccagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agcctggttttttgaagtcttaagaggcggccaagaaaagcacccactaccgatccagat 647
Query: 241 gttccccggggaccacagaactcaacaggatacttgaagcaatccctgggtttgatgtta 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 646 gttccccggggaccacagaactcaacaggacacttgaagcaatccctgggtttgatgtta 587
Query: 301 tggtcagaaaagtaacgacgagaaaattgatgaagccacacacacagcccccatacaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggtcagaaaagtaacgacgagaaaattgatgaagccacacacacagcccccatacaaat 527
Query: 361 -cccctcgtgtcctctcgggagatgcccaaacaccaggggcagcagtgctcctggatctg 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccccctcgtgtcctctcaggagatgcccaaacaccaggggcagcagtgctcctggatctg 467
Query: 420 acagcatcaggaaaacaggtgacagatagcactggctgtgtactggggatttcagctcag 479
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 466 acagcatcaggaaaacaagtgacagatagcactggctgtgtattggggacttcagctcag 407
Query: 480 caaagggatggcca-gagtgcctgagggcacaggcgtgagagcctggttcacctaactgg 538
||||||||| | || | |||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 406 caaagggatag-caggcgtgcctgagggcacaggcatgagagcctggtccacctaactgg 348
Query: 539 accttccttcatgaagcaggagctgcctcctgcttcccagcaagatggcctccttaatga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accttccttcatgaagcaggagctgcctcctgcttcccagcaagatggcctccttaatga 288
Query: 599 tcatcagggaagaaaagggttggggctcagctctctggtactgcaagggcttagcatgac 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 287 tcatcagggaagaaaagggttggggctcagctctgtggtactgcaagggcttagcatgac 228
Query: 659 ccagccctgactccatccccagtaccc 685
|||||||||||||||||||||||||||
Sbjct: 227 ccagccctgactccatccccagtaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_j14.g1 MSMg01no518_j14.g1 CHROMAT_FILE:
MSMg01no518_j14.g1 PHD_FILE: MSMg01no518_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:03 2005
(588 letters)
>mm_chr15_83904493_83905482
Length = 990
Score = 963 bits (498), Expect = 0.0
Identities = 538/552 (97%), Gaps = 2/552 (0%)
Strand = Plus / Plus
Query: 39 cggggggatggggtggagagacacagtgcggggccgggtttagggaaggttttctgtatc 98
||||||| |||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 239 cgggggggcgggggggggagacacagtgccgggccgggtttagggaaggttttctgtatc 298
Query: 99 gtattcagcttccaaagtggtccccctcctggtggtgttccaggcgattgcagagtgagc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtattcagcttccaaagtggtccccctcctggtggtgttccaggcgattgcagagtgagc 358
Query: 159 aagatcatgccttagtagctgactatataaagtatggaagcctcttaggggcagagaagc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagatcatgccttagtagctgactatataaagtatggaagcctcttaggggcagagaagc 418
Query: 219 ccggcacaccaaccaatctggtgaggccgagtaggagagagctcaggactcctcggcagg 278
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 ccggcacaccaaccaaactggtgaggcagagtaggagagagctcaggactcctcggcagg 478
Query: 279 agagctgcagccgcctgggcttccagtccttaaggaagagctgacacctctgctgctccc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agagctgcagccgcctgggcttccagtccttaaggaagagctgacacctctgctgctccc 538
Query: 339 caaaaagactttctggggacttcttctgtgaacct--gtcaggctaccactgacctgcac 396
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 539 caaaaagactttctggggacttcctctgtgaacccaagtcaggctaccactgacctgcac 598
Query: 397 tccgggccttaccacaggggaacaaaggagggtccttctataaatactagcctgtggctc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tccgggccttaccacaggggaacaaaggagggtccttctataaatactagcctgtggctc 658
Query: 457 cacccttctgtttgttctgctccttaaccacagtcgagctcaatgctccgacatcagcac 516
||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 659 cacccttctatttgttctgctccttaatcacagtcgagctcaacgctccgacatcagcac 718
Query: 517 agcccttctccaaatccactcaaggtacaaggaacctctaagacacgggccctgccctta 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agcccttctccaaatccactcaaggtacaaggaacctctaagacacgggccctgccctta 778
Query: 577 ccctccagcctg 588
||||||||||||
Sbjct: 779 ccctccagcctg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
