BAC Information

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BAC

Clone NameMSMg01-520H12
Chromosome15 (Build37)
Map Location 40,122,782 - 40,260,749
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520H12.T7 (MSMg01no520_h12.b1)MSMg01-520H12.TJ (MSMg01no520_h12.g1)
ACCAG591493AG591494
length763767
length of high quality
(start - end)		629 (47 - 675)655 (76 - 730)
definitionCHROMAT_FILE: MSMg01no520_h12.b1 PHD_FILE: MSMg01no520_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:31 2005CHROMAT_FILE: MSMg01no520_h12.g1 PHD_FILE: MSMg01no520_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,260,282 - 40,260,749)(40,122,782 - 40,123,058)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATAACTCCATCTGGGGCTTATGGAGGAATTGTGGCCAACTTCC
TCATAGTCATCTTTGCTGTCTGCAATAAACATAGCTTCTCACATAATGCA
GCTCTACTCTGTCACTCCAGCTTTCCTCACAAATACCTCACAGCTTGGGA
TGCCCTTCTCAGCTGCATGCAATCACCTCTCAAGGCCTGCTTACATGGAA
TCTAATAATTCAAATATTAGCTAGTCTCAGTAGTTTTCTAGAACCTTGAC
TCAATCCTCCCTGAGCATCTCACTCTTGAATCTTTTGTGCTGCCCAACCA
GTACCGTTTGGATGCTGCTGTCAAGTTCCACTGCCAGCTTGAGATATTAC
CTGCCCCATCCAAACCCTATAGTTGGACCCCTAGTACTCTTACTTCTCTC
AGCACTCTGATCTTCCAACCTCCCACTGGAATTAGGCTCAGATGACTCAG
TTCTAAGGACCTTGTGGTCTGCAGCTCCCAGCTCTCCAATGCTCATCCTT
CTAGCTCCAAAAGCCTGTTAATCACATAATCAAGTTGGTCACATGAACAC
CCCACTCCTGGAATTTCTGTTTTACATGTTGCTTTCACAGGTGCTGTGAC
AAAATACCTAAGAAAAGTGGCTTAGGGGAGGAAGGGTTTATTTTGGCTCA
CAGTTTAAGGTCACTGTTCATGACAAAAGGAATACTGTGGCAGGCATGTG
AAGAAGCTAGGTN

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGGGGTCAGCAATTGGGATGT
AAAATGACTTAATTAATTAATTAATTAATTAATTAATGGAAAGAAAAAAA
AATAGACCTTCCAGAATTTTTTTTTTTTGAAATCTGGGACTTGAGATGAT
CTGAGATATGGTTATAGTGACAAAGGAATCACTTTGATTGACTTCGAGTC
ACCTTCCAGCCTCTGTGGCCAAATGGAATGAGCAAGATGGAGTTCTTACT
GATCCAACATTCCCACCTGGTTCATACATACTCAGTGGTGGATAACACAT
GAGGCCTTCTCCTCCTGTGTTAACCTGCATGATGCCCCCAACCCTACAGG
CTGATTTCTGGCATGGACACAAGATACTGAGTTGCCTACTTAAAATGAAA
GCCTGGTATCACTTGGAAAGGAGAAAGCAGTGCGTGACTGTTACATCTGG
TCTTGATAAGGTCACATTGCTTTATGTGAGTACCAGGCTCACAAGGCTGA
CAAGAAGGCAGGTATACAAGGTCTTTGCCAAGTATCAAAGTTTTAATCTT
TATCTAAACAAGCCTTAAGCTACTGCACTTTAAAAAACAACCATAAGCAA
TACAGTGCCTTTCCCATTTATAATACATTGACTTTTGACTCTTGTTTACT
CTTTGAAAATTTCATATACACATATGATGTATTTTAGCTATGGCTACCCC
TTCTCCTCCATTCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_h12.b1 MSMg01no520_h12.b1 CHROMAT_FILE:
MSMg01no520_h12.b1 PHD_FILE: MSMg01no520_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
         (629 letters)



>mm_chr15_40259721_40260749
          Length = 1029

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Minus

                                                                        
Query: 162  ctcagctgcatgcaatcacctctcaaggcctgcttacatggaatctaataattcaaatat 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ctcagctgcatgcaatcacctctcaaggcctgcttacatggaatctaataattcaaatat 970

                                                                        
Query: 222  tagctagtctcagtagttttctagaaccttgactcaatcctccctgagcatctcactctt 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  tagctagtctcagtagttttctagaaccttgactcaatcctccctgagcatctcactctt 910

                                                                        
Query: 282  gaatcttttgtgctgcccaaccagtaccgtttggatgctgctgtcaagttccactgccag 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  gaatcttttgtgctgcccaaccagtaccgtttggatgctgctgtcaagttccactgccag 850

                                                                        
Query: 342  cttgagatattacctgccccatccaaaccctatagttggacccctagtactcttacttct 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  cttgagatattacctgccccatccaaaccctatagttggacccctagtactcttacttct 790

                                                                        
Query: 402  ctcagcactctgatcttccaacctcccactggaattaggctcagatgactcagttctaag 461
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 789  ctcagcactctgatcttccaaccttccactggaattaggctcagatgactcagttctaag 730

                                                                        
Query: 462  gaccttgtggtctgcagctcccagctctccaatgctcatccttctagctccaaaagcctg 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  gaccttgtggtctgcagctcccagctctccaatgctcatccttctagctccaaaagcctg 670

                                                                        
Query: 522  ttaatcacataatcaagttggtcacatgaacaccccactcctggaatttctgttttacat 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  ttaatcacataatcaagttggtcacatgaacaccccactcctggaatttctgttttacat 610

                                                            
Query: 582  gttgctttcacaggtgctgtgacaaaatacctaagaaaagtggcttag 629
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  gttgctttcacaggtgctgtgacaaaatacctaagaaaagtggcttag 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_h12.g1 MSMg01no520_h12.g1 CHROMAT_FILE:
MSMg01no520_h12.g1 PHD_FILE: MSMg01no520_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
         (655 letters)



>mm_chr15_40122204_40123258
          Length = 1055

 Score =  513 bits (265), Expect = e-149
 Identities = 274/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 379 tggtatcacttggaaaggagaaagcagtgcgtgactgttacatctggtcttgataaggtc 438
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 579 tggtatcacttggaaaggagaaagcagtgcgtgactgttacatttggtcttgataaggtc 638

                                                                       
Query: 439 acattgctttatgtgagtaccaggctcacaaggctgacaagaaggcaggtatacaaggtc 498
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acattgctttatgtgagtagcaggctcacaaggctgacaagaaggcaggtatacaaggtc 698

                                                                       
Query: 499 tttgccaagtatcaaagttttaatctttatctaaacaagccttaagctactgcactttaa 558
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 699 tttgccaagtatcaaagttttaatcattatctaaacaagccttaagctactgcactttaa 758

                                                                       
Query: 559 aaaacaaccataagcaatacagtgcctttcccatttataatacattgacttttgactctt 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaaacaaccataagcaatacagtgcctttcccatttataatacattgacttttgactctt 818

                                                
Query: 619 gtttactctttgaaaatttcatatacacatatgatgt 655
           |||||||||||||||||||||||||||||||||||||
Sbjct: 819 gtttactctttgaaaatttcatatacacatatgatgt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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