BAC Information

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BAC

Clone NameMSMg01-521A08
Chromosome15 (Build37)
Map Location 68,358,123 - 68,358,473
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000
Downstream geneEG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A08.T7 (MSMg01no521_a08.b1)MSMg01-521A08.TJ (MSMg01no521_a08.g1)
ACCAG591914AG591915
length727733
length of high quality
(start - end)
529 (55 - 583)469 (85 - 553)
definitionCHROMAT_FILE: MSMg01no521_a08.b1 PHD_FILE: MSMg01no521_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:14 2005CHROMAT_FILE: MSMg01no521_a08.g1 PHD_FILE: MSMg01no521_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTCTTCTTATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCCTAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACGCTCCTCAA
TTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTCCTACTGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTCGCAACCGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCCTCCTGAGTGAGGTAGCCC
AATCACAAAGGAACTCTCACAATATGTACTCACTGATAAGTGGATATTAT
CCCAGAAACTTAGGATACCCAAGATATAAAATACAATTTGCTAAACACAT
TACAATCAAGAGAATGAAGACCCAAGN
ATTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAAC
TTTTATCATGAATGGGTGTTGGACCTTGTCAAATGCTTTTTCTGCATCTA
ACGAGATGATGATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACATTGATGGATTTTCATATATTTAACCATCCCTGCATCCCTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTGCTTTAATATGTTCTTGGATTCGGT
TAGTGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATT
GGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCGTGGTTTAGGCCTATCT
CATTCCTAGTTGAAAAACCTAACCAGTACAACTGGCTCCAATCTTTCTAG
GCCTGTGAGCAGGACATAACATCACACCTTTTCTTCTGCGCAGGCCCTGA
CCTCCACAGTCGACCACTTCCCATGAGTCCATTCCAATTCTGAATCTCTG
AGTGGACTCCTAATCTGATCTGATTTTTTGGAAATGCCCCCCATGGACGT
ACCCAGAAATATATGTTACTAATTTCTCAAGTACCTCTAAATCTAATCAA
GTTTAGTATGCTTACCATCTTGACAAATGATTTCATTGCCAGCCTGCGAT
CACATTTTAAGACATATCTCTTAAGAAATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a08.g1 MSMg01no521_a08.g1 CHROMAT_FILE:
MSMg01no521_a08.g1 PHD_FILE: MSMg01no521_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:14 2005
         (469 letters)



>mm_chr15_68357605_68358473
          Length = 869

 Score =  598 bits (309), Expect = e-175
 Identities = 342/355 (96%), Gaps = 5/355 (1%)
 Strand = Plus / Minus

                                                                       
Query: 116 tacattgatggattttcatatatttaaccatccctgcatccctggaataaaacctacttg 175
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 869 tacattgatggattttcgtatattaaaccatccctgcatccctggaataaaaccttcttg 810

                                                                       
Query: 176 gtcaggatggatgattgctttaatatgttcttggattcggttagtgagaattttattgag 235
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 809 gtcaggatggatgattgctttaatatgttcttggattcggtgagcgagaattttattgag 750

                                                                       
Query: 236 gatttttgcatcgatattcataagagaaattggtctgaagttctctatctttgttgggtc 295
           |||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 749 gatttttgc----atattcataagagaaattggtctgaagttctctctctttgttgggtc 694

                                                                       
Query: 296 tttc-gtggtttaggcctatctcattcctagttgaaaaacctaaccagtacaactggctc 354
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 693 tttctgtggtttaggcctatctcgttcctagttgaaaaacctaaccagtacaactggctc 634

                                                                       
Query: 355 caatctttctaggcctgtgagcaggacataacatcacaccttttcttctgcgcaggccct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caatctttctaggcctgtgagcaggacataacatcacaccttttcttctgcgcaggccct 574

                                                                  
Query: 415 gacctccacagtcgaccacttcccatgagtccattccaattctgaatctctgagt 469
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 573 gacctccacagtcgaccacttcccatgagtccattccgattctgaatctctgagt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)