Query= MSMg01no521_f16.b1 MSMg01no521_f16.b1 CHROMAT_FILE:
MSMg01no521_f16.b1 PHD_FILE: MSMg01no521_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:40 2005
(711 letters)
>mm_chr15_24684931_24686042
Length = 1112
Score = 1205 bits (623), Expect = 0.0
Identities = 688/710 (96%), Gaps = 5/710 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgcttgatatggtgaanactccactggcctgtgctcaaggtggctttattta 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 912 gaattcagtgcttgatatggtgaaaactccactggcctgtgctcaaggtggctttattta 853
Query: 65 agtgaaagtttgt-aagtacttctaagcttagactcagtggttggccagtttccacaact 123
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 852 agtgaaagtttgtgaa-tacttctaagcttagactcagtggttggccattttccacaact 794
Query: 124 ctcaggatcatcacatgggggaaataatccaagccatcacagcatggctgctctcctgag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctcaggatcatcacatgggggaaataatccaagccatcacagcatggctgctctcctgag 734
Query: 184 agtttctttttctggaacagtttgtttagcacatgaaattctgttcctaacttctcaagt 243
||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 733 agtttctctttctagaacagtttgtttagcacatgaaattctattcctaacttctcaagt 674
Query: 244 gaggccctaatttatataatttataagacgattctgttttaccattggtatatcgtcttg 303
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 673 caggccctaatttatataatttataagacgattctgttttaccgttggtatatcgtcttg 614
Query: 304 aacattgatataatcaatcattaaacatttctcctaattttttccctcctgctctgtctt 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 613 aacattgatataatcaatcattaaacatttctcctcattttttccctcctgctctgtctt 554
Query: 364 agtttttaagatttgcaagtgaaaaaaatgaccaccaacaaaattttcagaggtattttt 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 agttttcaagatttgcaagtgaaaaaaatgaccaccaacaaaattttcagagggattttt 494
Query: 424 ggtggaattttcttgtgaggaattccactgtacagttaattgctattt-agtgttaattc 482
|||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 493 ggtggaattttcttatgaggaattccactgtacagttaattgatattttagtgttaattc 434
Query: 483 taatatgacaggagtattatagccttcatagattctatgtattttaacacaaaataa-tt 541
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 433 taatatgacaggaatattatagccttcatagattctatgtattttaacataaaa-aagtt 375
Query: 542 catgagctcaaagataatgcaaaagaaatgtttgctagtttgctaagatgacagtgtatg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catgagctcaaagataatgcaaaagaaatgtttgctagtttgctaagatgacagtgtatg 315
Query: 602 gctcttcttgaccagctaattgacatcaaatgaggttgtgaacaagacttatgtggacct 661
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 314 gctcttcttgaccagctaattgatatcaaatgaggttgtgaacaagacttacgtggacct 255
Query: 662 cactttggctttgttaatttgctaccacagtgcaatacttaaactattgt 711
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 254 cactttggctttgttaatttgctaccacagtgcaatacttaaagtattgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1112
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1102
Effective search space: 772502
Effective search space used: 772502
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no521_f16.g1 MSMg01no521_f16.g1 CHROMAT_FILE:
MSMg01no521_f16.g1 PHD_FILE: MSMg01no521_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:40 2005
(687 letters)
>mm_chr15_24518035_24519121
Length = 1087
Score = 1297 bits (671), Expect = 0.0
Identities = 686/697 (98%), Gaps = 10/697 (1%)
Strand = Plus / Plus
Query: 1 ttccttgactataaatattattaaaataacccaagtactttggttacctaagcacacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttccttgactataaatattattaaaataacccaagtactttggttacctaagcacacaac 250
Query: 61 actaataaatgctatgtgttgttagctctgggcttcagtcaactataatgtggatatcca 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actaataaatgctatgtattgttagctctgggcttcagtcaactataatgtggatatcca 310
Query: 121 ctctaaatgtgtgaattttgttttgttttgttttgtttt----------ttcaagacagg 170
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 311 ctctaaatgtgtgaattttgttttgttttgttttgttttgttttgttttttcaagacagg 370
Query: 171 atttctttgtatagccctggctgtcctggaactcactttgtagaccaggctggccttgaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atttctttgtatagccctggctgtcctggaactcactttgtagaccaggctggccttgaa 430
Query: 231 ctcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccaaa 490
Query: 291 agtgtgaattttttaatacactagaacatttcattaggtaaaagtatattataagtaagt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtgtgaattttttaatacactagaacatttcattaggtaaaagtatattataagtaagt 550
Query: 351 agaattgcattttcatggagacaatattttaaaatcaattcttttctcctgatgtaaata 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agaattgcattttcatggagacaatattttaaaatcaattcttttctcctgatgtaaata 610
Query: 411 ttaatgtccattaatcaatatcctgtgaagtattgaaattctctggtaaatcacatacaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttaatgtccattaatcaatatcctgtgaagtattgaaattctctggtaaatcacatacaa 670
Query: 471 attagagacaacacaaagttacacgatgacttctgtatcagtgggtagttagcggggctg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 attagagacaacacaaagttacacgatgacttctgtatcagtgggtagttagcggggctg 730
Query: 531 tgctttgagaacaaatacaatcggcaactttatataaaataataaagaggtctgaatatt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgctttgagaacaaatacaatcggcaactttatataaaataataaagaggtctgaatatt 790
Query: 591 ggccaagaccatgattctaaaatgttcaacatttggccacgagatggcagcatcacctaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ggccaagaccatgattctaaaatgttcaacatttggccacgagatggcagcatcacctaa 850
Query: 651 aacatagcacacatgaaacttcatcagttcctaaata 687
|||||||||||||||||||||||||||||||||||||
Sbjct: 851 aacatagcacacatgaaacttcatcagttcctaaata 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
