BAC Information

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BAC

Clone NameMSMg01-521I22
Chromosome15 (Build37)
Map Location 32,786,234 - 32,786,503
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521I22.T7 (MSMg01no521_i22.b1)MSMg01-521I22.TJ (MSMg01no521_i22.g1)
ACCAG592325AG592326
length760754
length of high quality
(start - end)		590 (51 - 640)584 (82 - 665)
definitionCHROMAT_FILE: MSMg01no521_i22.b1 PHD_FILE: MSMg01no521_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:55 2005CHROMAT_FILE: MSMg01no521_i22.g1 PHD_FILE: MSMg01no521_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGTTTTTTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATTTAGCTCTGTTCACCATTTTTAATAGGGTTATTTG
GTTTTCTTGAGTCCAACTTTTTGAGTATATATAGGATATTAGTCCCCTAT
GAGATTTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACAGTGTCTTTTGCCTTACAGAAACTTTGCAATGTTACGAG
GTCCCATTAGTCCATTCTTGATCTTACAGCACAAGTCACTGCTGTTCTGT
TCAGGGTTCTTTGCCCTGTACCCCACTTCTTCAAGGTTCTTCCCTACTTT
CTCTTTTGTAAGTTTCAGGTCTCTGGTTTTATGTGGATTTCCTTGATCCA
CTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAACTCCCATTC
TTCTACATGCTAATCACCAGTTGACCCAGCACCAATTGTTGAAGATGGTT
TTTTACTTTCCACTGGATGGTTTCAGCTCCTTTGTCAAAGATCAAGTGAC
CATAGGTGTATGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCT
GTCTATCTCTGTATCAGTAACATGCAGGGNTTTTGTTGTTGGTGNTGTTT
GTTTGTTGGTTTTGTTGAAATTTATTTATTATTTTCGAGACAGGGTTCTC
TGTTTAGCCTTGTTGTCCTGATATCACTCTAGACCAGCTGGCTCGAACTC
GAGATCTGCN

TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGCTCTTAATAAAATT
GGAACTATGGGATGTTCAGGTAAAGAAATTGACCTAGAGGAAAGTAGTCC
TCCATTATGTAACTCAGGAAAAAAATAAATAGTTTATGTTTGATCTTATA
TTTGGATATTAATTTGTTTCTAGTCTGTGTACATAAAGTGAATATCCACC
GAAGATCAGGGAAGAGGAAAATGTTTCCCATGGAAGGGAAAATAGAAGAT
AGATGGTGTTGTGGAGAGTAAAGGGGGAACCTAAAATAAAAGAAACAGTT
GGAGAGGAGATATGATAAAAGAGTAAGGGAGGCTTATGAGGAAAACAAGC
AACACTAAAGTATTTTTGAAAAGCCTTATAGAAACCTACTACTGTAGGAG
CTTCTTAAAATATATATACATGTGAAAGAAATCTAAACAGAGCTATCTTA
TAATTCAGGGGGTAACACCCCATCTAGATACCCTATGCTACCAAGCAAAA
CATGCTCTGCAAGAATGTAAATTCTTAGAATATTTTACTAAATCATTTGC
TAGCGAAATCTCATTGAATCCACAAACATCACAAAAAAGTGTAAAGTCTA
TTGATTGCTATTCATAACCTNGAAGTCTCTATTGTTTATGACACCACTTT
TCAACGTTGTCAAGCTTGGGCCTATCTAGAAGATTTTCCCCTACTGACTT
GCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_i22.g1 MSMg01no521_i22.g1 CHROMAT_FILE:
MSMg01no521_i22.g1 PHD_FILE: MSMg01no521_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:56 2005
         (584 letters)



>mm_chr15_32786031_32787010
          Length = 980

 Score =  495 bits (256), Expect = e-144
 Identities = 268/274 (97%), Gaps = 4/274 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   agctcttaataaaattggaactatgggatgttcaggtaaagaaattgacctagaggaaag 63
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 agctcttaagaaaattggaactatgggatgttcaggtaatgaaattgacctagaggaaag 263

                                                                       
Query: 64  tagtcctccattatgtaactcaggaaaaaaataaatagtttatgtttgatcttatatttg 123
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 264 tagtcctccattatgtaactcaggaaaa----aaatagtttatgtttgatcttatatttg 319

                                                                       
Query: 124 gatattaatttgtttctagtctgtgtacataaagtgaatatccaccgaagatcagggaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatattaatttgtttctagtctgtgtacataaagtgaatatccaccgaagatcagggaag 379

                                                                       
Query: 184 aggaaaatgtttcccatggaagggaaaatagaagatagatggtgttgtggagagtaaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggaaaatgtttcccatggaagggaaaatagaagatagatggtgttgtggagagtaaagg 439

                                             
Query: 244 gggaacctaaaataaaagaaacagttggagagga 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaacctaaaataaaagaaacagttggagagga 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 980
Length adjustment: 10
Effective length of query: 574
Effective length of database: 970
Effective search space:   556780
Effective search space used:   556780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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