BAC Information

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BAC

Clone NameMSMg01-522E21
Chromosome15 (Build37)
Map Location 99,882,788 - 99,883,391
singlet/doubletsinglet
Overlap genenone
Upstream genePrph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522E21.T7 (MSMg01no522_e21.b1)MSMg01-522E21.TJ (MSMg01no522_e21.g1)
ACCAG592894AG592895
length771777
length of high quality
(start - end)		534 (53 - 586)604 (82 - 685)
definitionCHROMAT_FILE: MSMg01no522_e21.b1 PHD_FILE: MSMg01no522_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005CHROMAT_FILE: MSMg01no522_e21.g1 PHD_FILE: MSMg01no522_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAATCATTTCCTAGAGAGATGGCTTAGTGGGTTGAGA
ACACTGGCTGCTCTTTGAGAGGACTTGGGTTTGACTTCCCAGCACCTATA
AAGTGGCTCAAAACCATATACAACTCCAGGGGATCTACTGCCTCTCTGGC
TTCCAGAGGAACACATAGCACACAGGCACATCTGAAGGCAAAACATCCAT
ACACATAAAATACTTTTTTAGCCGGGCGTAGTGGAACACACCTTTAATCC
CAGCACTCAGGAGGCAGAGGCAGTCGGATTTCTGATTTCCAGGCCAGCCA
GGGCTACACAGAGAAACCGTTTTGAAAAAACAGAAACAAACACCACCACC
CCCAATTCAATCAAACAAACAAACAAACAAACAAACAAACACCTTTTTCT
CACTATAAGCAACAAACTGTACCTGTTCTGTTTTACTGAATTATCAACTG
CAAATACACTTAAAAACAAACAAACTTATTTTATAAGCATGGGTGTTTTG
CCTGCATGTGTGTAGGGTGTAGGGGTACAGGATTACCCAGGAGCTAGTTA
CAGGCAGTTGTGAGCTGCCATGAGAATGCTGTGAATTGAACCCAGGTCTT
CTTCTGAAGAGCAGCAGTCTCCCATTCCTAAAATTTTAATCTGGCTGAAG
TTTTGTTTTGTTTTTAGACAGGATTTTAAAGCCAGGCTGCTCTGCCTCTG
AGTGTAAGAAAAAGGCATAGT

NTTTCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGATAGACCAGGTTAG
CCTCAGAGTCACAGAGAGCTGCCTCTGCCTCCTGGGTATTAGAGTTAAAG
GTGGGTAGCACACCAGCTAAGATGTATTTGAGTGTGTGTGTACACGCGTG
TGTAAGTGTGTAAAGGTAGAATGAAGATTTCATTTCCATAGTAGAGCCTT
GACCATTTCCATGGACAATGGGAATGATCACTTAGAGGGAGGAGGATGAC
CATTCAGGAGAGAAAATGGAGAGCGTGGGAAGGCCTCTCTGACAGGCGAG
TTCCTGTGAATTGAAGGATGCAGCAGGTACCAGGAGGCTTGTCTTATCTG
GGGTTGGAAACAGCAAGAAGAGAAGATAACTCCTCTGCAGTGCCAGGGGT
GGGCACAGAAGTAAGACTCAGGTGGCTAGTGTGCTGCTTTGCTGGAGACA
GGTCCTGAGATTTGAAGCCATAGAGAACCCGGGCGAGGGAGATGGGGAAT
GTGACTGCATTAGTCAGTCCTGGGGCCCATGGTCAGGGCAGAGACAATGA
GTGTAGTTCTGTCTGAATGAGAGTACAGAGGCGGATTCACAGCTGCTTCC
CTGCCATTGTGTCAGTGCTGGGGCGTGCTGGGCTGTGTTGGAGTTGGGGT
TGGGGGNAAAATTNTTTTTATANAATNTTTTTGGTTGTGTAGATCGTTTT
ATTGTTTTTGTAATTTATTTATATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_e21.g1 MSMg01no522_e21.g1 CHROMAT_FILE:
MSMg01no522_e21.g1 PHD_FILE: MSMg01no522_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
         (604 letters)



>mm_chr15_99882588_99883591
          Length = 1004

 Score = 1091 bits (564), Expect = 0.0
 Identities = 594/604 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggatagaccaggttagcctcagagtcacagagagctgcctctgcctcctgggtatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 actggatagaccaggttagcctcagagtcacagagagctgcctctgcctcctgggtattg 260

                                                                       
Query: 61  gagttaaaggtgggtagcacaccagctaagatgtatttgagtgtgtgtgtacacgcgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttaaaggtgggtagcacaccagctaagatgtatttgagtgtgtgtgtacacgcgtgt 320

                                                                       
Query: 121 gtaagtgtgtaaaggtagaatgaagatttcatttccatagtagagccttgaccatttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagtgtgtaaaggtagaatgaagatttcatttccatagtagagccttgaccatttcca 380

                                                                       
Query: 181 tggacaatgggaatgatcacttagagggaggaggatgaccattcaggagagaaaatggag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacaatgggaatgatcacttaaagggaggaggatgaccattcaggagagaaaatggag 440

                                                                       
Query: 241 agcgtgggaaggcctctctgacaggcgagttcctgtgaattgaaggatgcagcaggtacc 300
           ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agcgtgggaagacccctctgacaggcgagttcctgtgaatcgaaggatgcagcaggtacc 500

                                                                       
Query: 301 aggaggcttgtcttatctggggttggaaacagcaagaagagaagataactcctctgcagt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 aggaggcttgtcttatctggggttggaaacagcaagaagagaagataactcctctgaagt 560

                                                                       
Query: 361 gccaggggtgggcacagaagtaagactcaggtggctagtgtgctgctttgctggagacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaggggtgggcacagaagtaagactcaggtggctagtgtgctgctttgctggagacag 620

                                                                       
Query: 421 gtcctgagatttgaagccatagagaacccgggcgagggagatggggaatgtgactgcatt 480
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 621 gtcctgagatttgaagctatagagaacccgggggagggagatggggaatgtgattgcatt 680

                                                                       
Query: 481 agtcagtcctggggcccatggtcagggcagagacaatgagtgtagttctgtctgaatgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcagtcctggggcccatggtcagggcagagacaatgagtgtagttctgtctgaatgag 740

                                                                       
Query: 541 agtacagaggcggattcacagctgcttccctgccattgtgtcagtgctggggcgtgctgg 600
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtacagaggcagattcacagctgcttccctgccattgtgtcagtgctggggcgtgctgg 800

               
Query: 601 gctg 604
           ||||
Sbjct: 801 gctg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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