BAC Information

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BAC

Clone NameMSMg01-523B18
Chromosome15 (Build37)
Map Location 79,486,657 - 79,487,005
singlet/doubletsinglet
Overlap gene4933432B09Rik
Upstream geneLrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
Downstream genePgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B18.T7 (MSMg01no523_b18.b1)MSMg01-523B18.TJ (MSMg01no523_b18.g1)
ACCAG593508AG593509
length769753
length of high quality
(start - end)		608 (45 - 652)360 (78 - 437)
definitionCHROMAT_FILE: MSMg01no523_b18.b1 PHD_FILE: MSMg01no523_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:55 2005CHROMAT_FILE: MSMg01no523_b18.g1 PHD_FILE: MSMg01no523_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGAACGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCCAGCCTGAGCCACACAGAGCATCCCTGGCCAGCCTGGGCTA
CGTGAAACTCTGTCTCAAAAAAAGTAAAAAACGGGCTGGGGAGACGGCTC
AGCGGTTAAGAGCCCTGACTGTTCTTCCAGAGGCCCTGAGTTCAATTCCC
AGCAACCACATGGTGGCTCACAACCATCTGTAATGGGGTCTGATGCACTC
TTCTTGTGTGTCTGAAGATGGCTACAGTGGACTCGTATAAATAAAATAAG
TAAATCTTAAAAAAAAAGTAAAAACAAAAGCTTGCAGTAATGGCGTATGC
CTTTAATCTTAGCACTTGGGAGGCAGAGGTTCTAGGAGTTGAAAGGCCAG
CCTGGTCTACATAGAACATCTCAGGCAAGCCAGGGATACAGTGCAGTGAA
ACCTGGTCGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAGAGA
AAGAAAGAGAGGGGGGAAGGAGGGAGGGAGGGAGGTGATTTTTTTTTTTT
CTCTTTCTTTTTTCTTCCACTTCTTAGTTGTTCCACCGTTCTTTTTATTC
GCCCCGTTCCCCATTTTTGCTTTCACCCCGTTCTGGTATTTTTTTATATT
TAATAGCCTTCCTCTTTGA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCGGAGCGATGTGTGTATTT
TAAACATTCCTCTTTAGAAACTACTCAGTTGTCCCATTAGGTGTGAGTAA
TAGCATTCGGCTAAAGCTGGAAGCTTCCTGACAGCATCATCAGAGTCTAG
AACATAGTGTAATTTTCCAGCCATTCTTGGGAATGGGTAGGAGGACAAGG
AGAAGCCCTGAGATGCACCTGCCTCTTCTCATCTCCTGCTGCTTGGCCTG
TGAGGGTAAGAGCAGGAGGCATGAAACGGTACTGGCCTGGGGTCTGAGTC
AGCCTTTCCTTCCACCCAACCAACTTGGAGCAGTACAGGGGTCGGAGATG
GGGTGGTTGTGGAGGGATATCTGCAACCACAGGGCCGCAGAGTAGTGATC
AGAGGGAGATATGAAGGCAGTTTGGTTCAACAGGACTCAGTAGCTGGTGG
CCATTCAAACTTAGAATCTGACCCTGAATAGTTTATTTTAGGCATCTTTG
TACACAGCACAATTTGTTTAAAAAAAAAATCCTGGGGATAAATAGCTCAA
TCCCATGTGCACAGCAAGGCTTTAGGGAGGATATCTTCTAGTAACGTATC
AAGTACAGGGGAGATCTTCCACAAAGATGGGGTTTATGGATAACTGGGAA
AACAAGGTCCAGATAATGGAGTCTTCTTGAAGAATAATCCTTATGACGAC
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b18.g1 MSMg01no523_b18.g1 CHROMAT_FILE:
MSMg01no523_b18.g1 PHD_FILE: MSMg01no523_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:55 2005
         (360 letters)



>mm_chr15_79486482_79487241
          Length = 760

 Score =  634 bits (328), Expect = 0.0
 Identities = 347/360 (96%), Gaps = 11/360 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccggagcgatgtgtgtattttaaacattcctctttagaaactactcagttgtcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agcccggagcgatgtgtgtattttaaacattcctctttagaaactactcagttgtcccat 465

                                                                       
Query: 61  taggtgtgagtaatagcattcggctaaagctggaagcttcctgacagcatcatcagagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taggtgtgagtaatagcattcggctaaagctggaagcttcctgacagcatcatcagagtc 405

                                                                       
Query: 121 tagaacatagtgtaattttccagccattcttgggaatgggtaggaggacaaggagaagcc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 404 tagaacatagtgtaattttccagccattctggggaatgggtaggaggacaaggagaagcc 345

                                                                       
Query: 181 ctgagatgcacctgcctcttctcatctcctgctgcttggcctgtgagggtaagagcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgagatgcacctgcctcttctcatctcctgctgcttggcctgtgagggtaagagcagga 285

                                                                       
Query: 241 ggcatgaaacggtactggcctggggtctgagtcagcctttccttccacccaaccaacttg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggcaagaaacggtactggcctggggtctgagtcagcctttccttccacccaaccaacttg 225

                                                                       
Query: 301 gagcagtacaggggtcggagatggggtggttgtggagggatatctgcaaccacagggccg 360
           |||||||||||||||||||||           ||||||||||||||||||||||||||||
Sbjct: 224 gagcagtacaggggtcggaga-----------tggagggatatctgcaaccacagggccg 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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