BAC Information

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BAC

Clone NameMSMg01-525C06
Chromosome15 (Build37)
Map Location 48,573,652 - 48,574,186
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525C06.T7 (MSMg01no525_c06.b1)MSMg01-525C06.TJ (MSMg01no525_c06.g1)
ACCAG595050AG595051
length745757
length of high quality
(start - end)
520 (38 - 557)536 (70 - 605)
definitionCHROMAT_FILE: MSMg01no525_c06.b1 PHD_FILE: MSMg01no525_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:38 2005CHROMAT_FILE: MSMg01no525_c06.g1 PHD_FILE: MSMg01no525_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGTACCATACTGAATAGCTAAGAAGGACATGAAAAAATGCTCAGCATC
CTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGGGACAGCAGATGCTGG
TGAGGATGTGGAGAAAGAGGAACACTCTTTAATTGTTGGTGGGATTGCAA
GCTTGTACAACTACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTCCCAACCGGTAAAAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGATCCCAGATGCCCCTCAA
CAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGA
CCTGGAGGGCATCATCCTGAGTGAGGCAACACAATCACAAAAGAAATCAA
ATGATATGTACTCCCTGATAAGTGGATATTTACCCACAAACTTATTATAG
CGAGATATAATGTACTATTTGCAAAACACTTGAAACTGAAGCAGAATAAA
GACCAAAGTGTGGACACTTTGCCCCTCCTTAGAATTGGATACAAN
AAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGAGATGATTCATGAGTACCTGGCTGATGT
TATTAATAATCTCAGTGTTTACAGAACATTATTATTCAAAAAACACCTTC
ATATGTACTGTCTCAGGCTATCTTCCTAAGAAACCTACAAGACACCAGCA
AGGACACAGCCACTCACAAAGACAGAATTAGGTATTTATGAACTAATGGT
GACCACCTGCTTTTATTTTAATTTCATAGGAAATAGCCTTCTCTTTATAG
GATTTTCATATCCTGCACCAAGTACATAATAGTTTCTTTTTTTTAATTGG
ATATTTTATTTATTTACGTTTCAACTCTCATCCTTTTTTCTGGTTTCCCC
TCCACAAATCTCCTATCCCATCTACCCTACCTCTGCTTCTATGAGGGTAC
TCCCATACACACCCATATACTTCCACCTCACCAGCCTAGCATTCCTCTAT
ACTGGGCCATCAGAGCCTTCATAGGACCTCGGGCCTTCCTTCCCATTAAT
GCCAGATAAGGCCACACTCTGCTACATCCGCAGTGGCAGCCATGGGTCCT
CTTTGGTTAGTGAAGTTCTGGGGGTGGGGGGTCCGGGCTGGTTGAAATTC
TTCCCCCCCCCATAGGGTTGTCAACCCTTTCATCTCCTCCTGCCCTTGCG
AGAAATTCTTCCGTTGGGGTTTCTTACTTGTTTCCATGGCTTATTGCCAT
TTATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_c06.g1 MSMg01no525_c06.g1 CHROMAT_FILE:
MSMg01no525_c06.g1 PHD_FILE: MSMg01no525_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:38 2005
         (536 letters)



>mm_chr15_48573452_48574387
          Length = 936

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%), Gaps = 1/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagatgattcatgagtacctggctgatgttattaataatctcagtgtttacagaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagatgattcatgagtacctggctgatgttattaataatctcagtgtttacagaacat 260

                                                                       
Query: 61  tattattcaaaaaacaccttcatatgtactgtctcaggctatcttcctaagaaacctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattattcaaaaaacaccttcatatgtactgtctcaggctatcttcctaagaaacctaca 320

                                                                       
Query: 121 agacaccagcaaggacacagccactcacaaagacagaattaggtatttatgaactaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacaccagcaaggacacagccactcacaaagacagaattaggtatttatgaactaatgg 380

                                                                       
Query: 181 tgaccacctgcttttattttaatttcataggaaatagccttctctttataggattttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaccacctgcttttattttaatttcataggaaatagccttctctttataggattttcat 440

                                                                       
Query: 241 atcctgcaccaagtacataatagtttcttttttttaattggatattttatttatttacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctgcaccaagtacataatagtttcttttttttaattggatattttatttatttacgt 500

                                                                       
Query: 301 ttcaactctcatccttttttctggtttcccctccacaaatctcctatcccatctacccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaactctcatccttttttctggtttcccctccacaaatctcctatcccatctacccta 560

                                                                       
Query: 361 cctctgcttctatgagggtactcccatacacacccatatacttccacctcaccagcctag 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 cctctgcttctatgagggtactcccatacacactcatatacttccacctcaccagcctag 620

                                                                       
Query: 421 cattcctctatactgggccatcagagccttcataggacctcgggccttccttcccattaa 480
           |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 cattcc-ctacactgggccatcagagccttcataggaccttgggccttccttcccattaa 679

                                                                   
Query: 481 tgccagataaggccacactctgctacatccgcagtggcagccatgggtcctctttg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgccagataaggccacactctgctacatccgcagtggcagccatgggtcctctttg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)