BAC Information

Click to search

BAC

Clone NameMSMg01-525N10
Chromosome15 (Build37)
Map Location 83,383,378 - 83,531,901
singlet/doubletdoublet
Overlap geneMcat, Tspo, Ttll12, Scube1
Upstream gene9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik
Downstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525N10.T7 (MSMg01no525_n10.b1)MSMg01-525N10.TJ (MSMg01no525_n10.g1)
ACCAG595578AG595579
length741751
length of high quality
(start - end)		585 (58 - 642)632 (68 - 699)
definitionCHROMAT_FILE: MSMg01no525_n10.b1 PHD_FILE: MSMg01no525_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:35 2005CHROMAT_FILE: MSMg01no525_n10.g1 PHD_FILE: MSMg01no525_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,383,378 - 83,383,962)(83,531,476 - 83,531,901)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
GCCTTCACAGCTACATTACAGTTCACCCTTCCCATGCTTCCAAACAAAAC
AAAAGTACAGGCATTAAAAATACGATTTTCTAGGGGGCTGGAGAGATGGT
TCATCAGTTACAAGCACTGGCTGCTCTTCCAGAGAACCCTAGTTCAATTC
CCAGCATCCTTGTGGCAGCTCACAGCTGTTTCTATTCCAGGGGATCCAAC
ACCCTCAGAGACATGAATGCAGACAAAACACCAATGCAGATAGAGTAAAA
TTAAACTTAAAAAACTATGATTTTCCAAGCCACAGAGAAGCAGATTTAGT
CCCCCCAGACCTATTTCACATGACTGCTAACATAAGTAGGCAATGCTGGT
ATCTATAGACTCTCAGTGCGGGCTTGGCCCAGAGAAGCACCGAGGAAATG
TGTCACAGGGCCATGCTTATTCCTGTCACCTGAGCCTTCCGTCAGGATCA
TGTTCATTCCTGTCGCCTGAGCCTCCCATTGCTCCTAACAATTGCCTCAG
AAGGTGGCTGTGGAGGTAGAACAGAGGGTCTCAGCACCAGTTAACATGTG
TTGTCCTGGGAGTATAACATATCCGCAGCAAGTGAAGTCACATGCGCTAA
TGTTTGCCATGCCATCTTCTGTCTTTTCAGACAGGGTCTCACTGTGTAGC
CCCAACTGGGCTGGAATATGGAGAGATCTGCCTGCTTCCGN

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAGGTGTGCAGACAGTATTTCCTCACATCTTC
ACACTGTCTTAGCTCTACAGACATTCTCATGGTCCATATTCTCTTCTTCA
CAAGGATGTCAGGTATACTGGATGAGGACTGGCCATGGCTGCCTCTCCTC
ACCCCAATGATTATCTGACGTGCTGGGTAAAATTGCCATCTTGGCTGGGT
TCAGATTCACCATGGGAGCACCTCTGAGTATGTCCATGAGGGATAGTCTG
TATTAGGTTTGTTGAGCGGCCATAGTAAATTTAGGGGTCACTGTTCCATG
GGCTGGGGTCCCAGGCTGAATGAAGAAGAGAAAGGGGGCTGAGCAGAGAG
GCTTGTCTCTGTGTCCTGGCTGTGGATGAAACGTGACTGGCTGCTTCCTC
AAACCCCTGCTGCCAGGTCCTCCTGACAGGATCCTCTCCTAAGCTGCTTT
AGATCATAGTAATCAGAAAAGAAAAGTAGCTGGCACAGAAGACAGCCAAC
TGTAACTGATGCAACTATGACGACCGTTATTCCTCCGGAGGCCACACTCA
CAGTTCTGGAGCTAAGGCCTCAGAATCTTTTGAGGAAGGGACATGGAGGT
GTTTCACAGTCTGTAACCCAAGGGACAGCAACCAGTGAGCCACACACGGC
TCTCAGAACAGACCCCACCTGTCCCCAACTCTCTTTTGCCATGACCCGCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_n10.b1 MSMg01no525_n10.b1 CHROMAT_FILE:
MSMg01no525_n10.b1 PHD_FILE: MSMg01no525_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:35 2005
         (585 letters)



>mm_chr15_83383178_83384162
          Length = 985

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctacattacagttcacccttcccatgcttccaaacaaaacaaaagtacaggcattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctacattacagttcacccttcccatgcttccaaacaaaacaaaagtacaggcattaa 260

                                                                       
Query: 61  aaatacgattttctagggggctggagagatggttcatcagttacaagcactggctgctct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatgattttctagggggctggagagatggttcatcagttacaagcactggctgctct 320

                                                                       
Query: 121 tccagagaaccctagttcaattcccagcatccttgtggcagctcacagctgtttctattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagagaaccctagttcaattcccagcatccttgtggcagctcacagctgtttctattc 380

                                                                       
Query: 181 caggggatccaacaccctcagagacatgaatgcagacaaaacaccaatgcagatagagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggggatccaacaccctcagagacatgaatgcagacaaaacaccaatgcagatagagta 440

                                                                       
Query: 241 aaattaaacttaaaaaactatgattttccaagccacagagaagcagatttagtcccccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattaaacttaaaaaactatgattttccaagccacagagaagcagatttagtcccccca 500

                                                                       
Query: 301 gacctatttcacatgactgctaacataagtaggcaatgctggtatctatagactctcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctatttcacatgactgctaacataagtaggcaatgctggtatctatagactctcagt 560

                                                                       
Query: 361 gcgggcttggcccagagaagcaccgaggaaatgtgtcacagggccatgcttattcctgtc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gcgggcttggcccagagaagcaccgaggaaatgtgccacagggccatgcttattcctgtc 620

                                                                       
Query: 421 acctgagccttccgtcaggatcatgttcattcctgtcgcctgagcctcccattgctccta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 acctgagccttccgtcaggatcatgttcattcctgtcgcctgagcctcccgttgctccta 680

                                                                       
Query: 481 acaattgcctcagaaggtggctgtggaggtagaacagagggtctcagcaccagttaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaattgcctcagaaggtggctgtggaggtagaacagagggtctcagcaccagttaacat 740

                                                        
Query: 541 gtgttgtcctgggagtataacatatccgcagcaagtgaagtcaca 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgttgtcctgggagtataacatatccgcagcaagtgaagtcaca 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_n10.g1 MSMg01no525_n10.g1 CHROMAT_FILE:
MSMg01no525_n10.g1 PHD_FILE: MSMg01no525_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:35 2005
         (632 letters)



>mm_chr15_83530870_83531901
          Length = 1032

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%)
 Strand = Plus / Minus

                                                                        
Query: 207  ctgagtatgtccatgagggatagtctgtattaggtttgttgagcggccatagtaaattta 266
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ctgagtatgtctgtgagggatagtctgtattaggtttgttgagcggccatagtaaattta 973

                                                                        
Query: 267  ggggtcactgttccatgggctggggtcccaggctgaatgaagaagagaaagggggctgag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  ggggtcactgttccatgggctggggtcccaggctgaatgaagaagagaaagggggctgag 913

                                                                        
Query: 327  cagagaggcttgtctctgtgtcctggctgtggatgaaacgtgactggctgcttcctcaaa 386
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 912  cagagaggcttgtctctgtgttctggctgtggatgaaacatgactggctgcttcctcaaa 853

                                                                        
Query: 387  cccctgctgccaggtcctcctgacaggatcctctcctaagctgctttagatcatagtaat 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  cccctgctgccaggtcctcctgacaggatcctctcctaagctgctttagatcatagtaat 793

                                                                        
Query: 447  cagaaaagaaaagtagctggcacagaagacagccaactgtaactgatgcaactatgacga 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  cagaaaagaaaagtagctggcacagaagacagccaactgtaactgatgcaactatgacga 733

                                                                        
Query: 507  ccgttattcctccggaggccacactcacagttctggagctaaggcctcagaatcttttga 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  ccgttattcctccggaggccacactcacagttctggagctaaggcctcagaatcttttga 673

                                                                        
Query: 567  ggaagggacatggaggtgtttcacagtctgtaacccaagggacagcaaccagtgagccac 626
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 672  ggaagggacatggaggtgtttcacagtctgtaacccaagggacagcaactagtgagccac 613

                  
Query: 627  acacgg 632
            ||||||
Sbjct: 612  acacgg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |