BAC Information

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BAC

Clone NameMSMg01-526M16
Chromosome15 (Build37)
Map Location 101,290,094 - 101,290,648
singlet/doubletsinglet
Overlap geneKrt85
Upstream geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt83, 1700011A15Rik
Downstream gene5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M16.T7 (MSMg01no526_m16.b1)MSMg01-526M16.TJ (MSMg01no526_m16.g1)
ACCAG596299AG596300
length729726
length of high quality
(start - end)		639 (38 - 676)551 (69 - 619)
definitionCHROMAT_FILE: MSMg01no526_m16.b1 PHD_FILE: MSMg01no526_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:49 2005CHROMAT_FILE: MSMg01no526_m16.g1 PHD_FILE: MSMg01no526_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
GGACTTTAAGAAGCAGGGTGAGTTCTTCATTGTTGATGGGTTGATATTGC
TTGTGGTTTGTTAAGTAATTGTGTGCAAAGAAGAAACAACAACAACAACA
AGAATTTCAACATCCTGAGGGCAAAGATCAAACTTGCCCAAGGAATTTGA
TACCCCCTAATCAGCAGGAAGTATTCTAATGATAACATCTCTCCTTTCCT
TTCTATCCTTTTTTTCTATCCTACATACCTAATGTTATAGGGCTGAAAGG
ATAGGAAAAGAGGAGAAGAGTGGGGAAAAAAAGCAGAACTCACAAAGTAG
CAACACTGGCTACAAGTGGCACCCAGATGTGGGGCTAAACACAATACAAA
ACCTGATTTCAATGCCATAGAGAAAATGGCTAAGGATGAACAAGTGACTT
CTTTTTCAAGATGCCAGCAAAAAATAAAATAAAATAAAATAAAATAAAAT
AAAATAAATGTATTGTGGCTGTTACCCCAGGAATATAGAGTATATTTTGT
TTCATAAAAAGGTTGGAAGAATGGCTGAGCTGTTGGAAAAAAATATATGG
GTGAAAATGGAGGTGTCTTAGTGGGGGGTGACTCAAATGGGAAAACAAAA
GGAGTCACTCTGCTCTCTCATTTATGAAAGAGTTTCAGACTTGGCTGTGC
AACTGGAGCAAATTGAAAGTGGAAGTGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGGAATTAAAAGCCAGACCCCTTCCCGTGAA
GCATCTGGTTCCATCTCCATATAAAGGTCTAGTCTTCTAGTCTGACCTCA
AATTCCCCCTGCAGCTGTGGCAGCTTCTGTTTTGCTTTTAGTTCTCATAT
AAACTCCTTTCACTCTCTGACCCCTGTCACAGGCAGTAAATCTGTCCATA
CCAAATCCCCAATACTTACAGACATTCACAGCTCCTACACCTTCACACAG
TCTGGGGGGAAGACAAGAAAGAACTTATGAAGCCCAACGTAGTAGCAAAC
AGTGCCCCCCACCACAACCTTGCTCCACAAGTCAGAATTTTCCCTCAACA
GTTGGTCAAAAATGACCCATTATAAACACAGCCTCAAAGGGACCAATGGA
AGATTTGCCCTCCAGAGTCTGGCTGTTGGCCAGTCAAGGGCAAGATGGGG
TTTGATTCCTCTGGGAAGGACTCACCTCTGTTCCTCGCCCTCCAGCAGGC
GCCTGTAGGTGGTGATCTCAACGTCCAGCCCCAGCTTGGAGTTCATCACC
TCCTGGTACTCCTTGAGCAGGCAGGCCATGTCCTGCTTGGCCTTCTGCAG
GGCACCCTCCAGCTCAGCCAGCTTGCAGCGGGCATCAGCAAGGGCAGCCT
CTCCCTGCTGCTCAGACTGGGTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m16.g1 MSMg01no526_m16.g1 CHROMAT_FILE:
MSMg01no526_m16.g1 PHD_FILE: MSMg01no526_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:49 2005
         (551 letters)



>mm_chr15_101289894_101290848
          Length = 955

 Score = 1031 bits (533), Expect = 0.0
 Identities = 548/555 (98%), Gaps = 4/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaattaaaagccagaccccttcccgtgaagcatctggttccatctccatataaagg- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctggaattaaaagccagaccccttcccgtgaagcatctggttccatctccatataaaggt 260

                                                                       
Query: 60  ---tctagtcttctagtctgacctcaaattccccctgcagctgtggcagcttctgttttg 116
              ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctatctagtcttctagtctgacctcaaatttcccctgcagctgtggcagcttctgttttg 320

                                                                       
Query: 117 cttttagttctcatataaactcctttcactctctgacccctgtcacaggcagtaaatctg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttagttctcatataaactcctttcactctctgacccctgtcacaggcagtaaatctg 380

                                                                       
Query: 177 tccataccaaatccccaatacttacagacattcacagctcctacaccttcacacagtctg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccataccaaatccccaatacttacagacattcacagctcctacaccttcacacagtctg 440

                                                                       
Query: 237 gggggaagacaagaaagaacttatgaagcccaacgtagtagcaaacagtgccccccacca 296
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gggggaagacaagaaagaacttatgaagcccaatgtagtagcaaacagtgccccccacca 500

                                                                       
Query: 297 caaccttgctccacaagtcagaattttccctcaacagttggtcaaaaatgacccattata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaccttgctccacaagtcagaattttccctcaacagttggtcaaaaatgacccattata 560

                                                                       
Query: 357 aacacagcctcaaagggaccaatggaagatttgccctccagagtctggctgttggccagt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacacagcctcaaagggaccaatggaagatttgccctccagagtctggctgttggccagt 620

                                                                       
Query: 417 caagggcaagatggggtttgattcctctgggaaggactcacctctgttcctcgccctcca 476
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 caagggcaagatggggtttgattcctctgggaaagactcacctctgttcctcgccctcca 680

                                                                       
Query: 477 gcaggcgcctgtaggtggtgatctcaacgtccagccccagcttggagttcatcacctcct 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaggcgcctgtaggtggtgatctcaacgtccagccccagcttggagttcatcacctcct 740

                          
Query: 537 ggtactccttgagca 551
           |||||||||||||||
Sbjct: 741 ggtactccttgagca 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 955
Length adjustment: 10
Effective length of query: 541
Effective length of database: 945
Effective search space:   511245
Effective search space used:   511245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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