NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGG
NGGAATTCTTAATTTGACACTATCTGTTTTGGAAACATCAGAATTTTCAT
TTTGCTTAAAAGTGCTCTGTTGATGGGCAATGAAATTGAGAGGGTTACTG
GGTAGTGTCAAAGGATTGACATGTAATCGAGTCCAAGCATTTGGAAATTA
AAGCATTTTTCATCAAGTGTCACAGCCTTTATATGAATATTAAATTACAT
GGTATGACTTAGCATAAACATACTTTGTAAGAATCCACACTGCTTACATG
CTCACCTGTTAATGGAACAAATTATGCACAGCTGATGGATTTTGAAAATA
GCAGCTGTCAGCCTCTGTTAAAATCAATCAGTGGCAAGGCTGTATATATT
AAATCTTATATCATGTCATGAAAATGTATTTACAGTTTAACCACTAATAA
GCATAACCGTCAGTTTCACTGATGACAGTCTCATGGCATGTTTTGACTCC
AGATATTTTACTTGTGTGTTACTTTTTTAATTAAAACTTGGCCATTTTTT
AGTAAAATTACCCAAATACTTTTTGTTACACTTAATAAAAAGAGAAAGCA
TTGCCCAGATTCTCGTGTTAGCTGGGAAATACCCTCCATTCTTTGTACAC
CTTATTTTTCGGAGTTAGTGTGACCAGCAGATCAAAACTCATTACAGCTG
AGTATTATTGAAAGCAGTCTTAGTGGGAGGTCTCACATTTACCCAGTGAC
GGTGCTATGGAGGGAGCCC

ATCCTGNNNNNCCTNTCCCAACTTNNTACCTTAAAAATCCCGAATTCGGA
CCGAAANNNATCTTTTTTTTNGNNNCGNNCCCCAAAAGACACGCAATACA
ACGGNAAAAACTTGAGCTAGTATACGTAACTAAGAAAAACCNNNAAANTT
TTTTTTNAAAAAAAAAAAAAAAAAANNTTTTTCCNAAAAACCCCAAAAAA
TTTTTTTTAAAAAAAAANNTTCCCCCCCCCTTTTCCCCCCCCCCCCGAAA
AAAAAAAAAAAAAATTTTTTTTTTTTTGCCCCCCCCAAAAAAAACCANAN
CCCCCCCCACACCCCCCCCCAAAAAAATTTTTTAANNNNNGGNNNNNNNN
NNNNNNNNTTNNNNAATAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCAA
NNNNNCCNNNNNNNTNNNNNNCCCCCCCCTTTTTTTTTNTNNTNTNNTTT
TTNCTNNNNNNNNNNNNNANNNNANNNAAAAANNNAANANNNAAANNNNN
TTTTTTTTTCTTTTTTTCTCCCAAAAAACCCCCNCTNATAAAATAAAAAC
AATCTCCCCCTCCCCTCCCNTCCCCNCNAAATAAAAAAAAAAAAAAAATA
TTAATATTAATAAATTCCTACCCACCCCCCCACCCC

Query= MSMg01no530_a19.b1 MSMg01no530_a19.b1 CHROMAT_FILE:
MSMg01no530_a19.b1 PHD_FILE: MSMg01no530_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:14 2005
         (694 letters)



>mm_chr15_52557112_52558204
          Length = 1093

 Score = 1272 bits (658), Expect = 0.0
 Identities = 685/694 (98%), Gaps = 1/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcttaatttgacactatctgttttggaaacatcagaattttcattttgcttaaaag 60
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gaattcttaatttgagactatctgtttttgaaacatcagaattttcattttgcttaaaag 260

                                                                       
Query: 61  tgctctgttgatgggcaatgaaattgagagggttactgggtagtgtcaaaggattgacat 120
            ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cgctctattgatgggcaatgaaattgagaggggtactgggtagtgtcaaaggattgacat 320

                                                                       
Query: 121 gtaatcgagtccaagcatttggaaattaaagcatttttcatcaagtgtcacagcctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatcgagtccaagcatttggaaattaaagcatttttcatcaagtgtcacagcctttat 380

                                                                       
Query: 181 atgaatattaaattacatggtatgacttagcataaacatactttgtaagaatccacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaatattaaattacatggtatgacttagcataaacatactttgtaagaatccacactg 440

                                                                       
Query: 241 cttacatgctcacctgttaatggaacaaattatgcacagctgatggattttgaaaatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttacatgctcacctgttaatggaacaaattatgcacagctgatggattttgaaaatagc 500

                                                                       
Query: 301 agctgtcagcctctgttaaaatcaatcagtggcaaggctgtatatattaaatcttatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgtcagcctctgttaaaatcaatcagtggcaaggctgtatatattaaatcttatatc 560

                                                                       
Query: 361 atgtcatgaaaatgtatttacagtttaaccactaataagcataaccgtcagtttcactga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcatgaaaatgtatttacagtttaaccactaataagcataaccgtcagtttcactga 620

                                                                       
Query: 421 tgacagtctcatggcatgttttgactccagatattttacttgtgtgttacttttttaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacagtctcatggcatgttttgactccagatattttacttgtgtgttacttttttaatt 680

                                                                       
Query: 481 aaaacttggccattttttagtaaaattacccaaatactttttgttacacttaataaaaag 540
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaact-ggccattttttagtaaaactacccaaatactttttgttacacttaataaaaag 739

                                                                       
Query: 541 agaaagcattgcccagattctcgtgttagctgggaaataccctccattctttgtacacct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaaagcattgcccagattctcgtgttagctgggaaataccctccattctttgtacacct 799

                                                                       
Query: 601 tatttttcggagttagtgtgaccagcagatcaaaactcattacagctgagtattattgaa 660
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 800 tatttttcggagttagtgtgaccagcagatcaaaactcatttcaactgagtattattgaa 859

                                             
Query: 661 agcagtcttagtgggaggtctcacatttacccag 694
           ||||||||||||||||||||||||||||||||||
Sbjct: 860 agcagtcttagtgggaggtctcacatttacccag 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1093
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1083
Effective search space:   740772
Effective search space used:   740772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)