Query= MSMg01no531_l17.b1 MSMg01no531_l17.b1 CHROMAT_FILE:
MSMg01no531_l17.b1 PHD_FILE: MSMg01no531_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:27 2005
(620 letters)
>mm_chr15_101998042_101999061
Length = 1020
Score = 1009 bits (522), Expect = 0.0
Identities = 575/602 (95%), Gaps = 18/602 (2%)
Strand = Plus / Plus
Query: 5 gaattcactttttatggagtgtgcagagctggccaaagctgcggatctagaggctgcacc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactttttaaggagtgtgcagagctggccaaagctgcggatctagaggctgcacc 265
Query: 65 tattgcttttgaggctggagggacggctcagtggcgaagagtacttgccacagagccacc 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 tattgcttttgaggctggagggacggctcagtggtgaagagtacttgccacagagccacc 325
Query: 125 taattcagatcccagtaccacaaatccagccaggtgtggtccatcgtgcatgcctgaaac 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taattcagatcccagtac-acaaatccagccaggtgtggtccatcgtgcatgcctgaaac 384
Query: 185 cccatgagacagagaatcaccagggctggcttggcttagcggagaacaaaaacctcagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccatgagacagagaatcaccagggctggcttggcttagcggagaacaaaaacctcagtc 444
Query: 245 cagatatttttatagtaagtggtggcagatgtgcattataggatatggaattggttcttt 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagatatttttatagtaagtggtagcagatgtgcattataggatatggaattggttcttt 504
Query: 305 ttgctgtgtccatctcagggattaacctaaggttgccaggcttggcagcaagtgctcctc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgctgtgtccatctcagggattaacctaaggttgccaggcttggcagcaagtgctcctt 564
Query: 365 agaccagagcaatcctgccagtacccaggttgctttttgtttctctttgctgtttgataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaccagagcaatcctgccagtacccaggttgctttttgtttctctttgctgtttgataa 624
Query: 425 ggatattatttcaatgccaggcctgcattgcctcctggtttcatggtaggtccttctgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggatattatttcaatgccaggcctgcattgcctcctggtttcatggtaggtccttctgtt 684
Query: 485 gacttctggttctgaggctcatagactatagaactgggttgcatggagcaaggcttcctc 544
||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 -----------ctgagactcatagactatagaactgggttgcatggaacaaggcttcctc 733
Query: 545 caacagcacacagacagcacatgcatgcacgcacgcacgcgcacacacatacacacacac 604
||||||||||||||||||||||||| ||| ||| ||| ||||||| ||||||||||
Sbjct: 734 caacagcacacagacagcacatgca--cacacacacac----acacacacacacacacac 787
Query: 605 ac 606
||
Sbjct: 788 ac 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_l17.g1 MSMg01no531_l17.g1 CHROMAT_FILE:
MSMg01no531_l17.g1 PHD_FILE: MSMg01no531_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:27 2005
(599 letters)
>mm_chr15_102173058_102174056
Length = 999
Score = 1098 bits (568), Expect = 0.0
Identities = 592/600 (98%), Gaps = 1/600 (0%)
Strand = Plus / Minus
Query: 1 taaaattatgaataaataaaaccttagccaggtggtggtgatgcacaactttaatctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 taaaattatgaataaataaaaccttagccaggtggtggtgatgcacaactttaatctcag 897
Query: 61 cactggggaggcagaggcaggtggatctctgtgaatccgaggccaccttggtctatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 cactggggaggcagaggcaggtggatctctgtgaatccgaggccaccttggtctatgaaa 837
Query: 121 ggatttcaggacagccagagctgttacatggagaaactcttgggg-aaaaaaaaaagtac 179
|||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 836 ggatttcaggacagccagagctgttacacgaagaaactcttggggaaaaaaaaaaagtac 777
Query: 180 atacaattattgtatgtgggcacacatgtgataggtcaagtgtggtgggcggttttgggg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 776 atacaattattgtatgtgggcacacatgtgataggtcaagtgtggtgggcggttttggag 717
Query: 240 agttgatttccccttacactgtgtgggtcccggcggttgtctgagctcaggtcttcaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agttgatttccccttacactgtgtgggtcccggcggttgtctgagctcaggtcttcaggc 657
Query: 300 ttgactgccgtctctgtgttccctcctgctccctgctccattcctgtttctttcttttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttgactgccgtctctgtgttccctcctgctccctgctccattcctgtttctttcttttcc 597
Query: 360 tcccctgcagccctattttagcagtcttcctagagaagttaggaaatgaccaagtttaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 596 tcccctgcagccctattttagcagtcttcctagagaagttaggaaatgaccaaatttaag 537
Query: 420 tatggtttggttttttgtttgtgtgtttgtttgttttttgatagtgtctccctgtgttgg 479
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 536 tatggtttggttttttgtttgtttgtttgcttgttttttgatagtgtctccctgtgttgg 477
Query: 480 cctagaactcactatgcagaccaggctagttttgagctcacagagatggaccggcctctg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 476 cctagaactcactatgcagaccaggctagttttgagctcacagagatggaccagcctctg 417
Query: 540 attcctgcgtgctgggattgaagggtgtaccactgtgcccgatgtatttcattctgttct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attcctgcgtgctgggattgaagggtgtaccactgtgcccgatgtatttcattctgttct 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
