Query= MSMg01no533_l17.b1 MSMg01no533_l17.b1 CHROMAT_FILE:
MSMg01no533_l17.b1 PHD_FILE: MSMg01no533_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:01 2005
(632 letters)
>mm_chr15_12361662_12362693
Length = 1032
Score = 1071 bits (554), Expect = 0.0
Identities = 599/628 (95%), Gaps = 24/628 (3%)
Strand = Plus / Minus
Query: 5 gaattctcccaccccacccccaggggcctgagagcttgccttgtcttttgtttgctttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattctcccaccccacccccaggggcctgagagcttgccttgtcttttgtttgctttgt 562
Query: 65 tgtcttgttttttcttgccttgctgtttacataagtagtagtttagctcccaacatgaca 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcttgttttttcttgccttgctgtttacataagtagtagtttagctcccaacatgaca 502
Query: 125 tttgcagagaaagaagaccatggtccttgtactccacttaaagcgcccagctttccacct 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgaagagaaagaagaccatggtccttgtactccacttaaagcgcccagctttccacct 442
Query: 185 cttgcctaccaggactctacagtttctttctttggagattttatttttccactcaagcct 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cttgcctaccaggactctacagtttctttctttgaagattttatttttccactcaagcct 382
Query: 245 tctctagtcccttattttgagcgttctcttggccttttaacactcaggagtcagaaagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctagtcccttattttgagcgttctcttggccttttaacactcaggagtcagaaagtc 322
Query: 305 atcctctgattcatgacttgcaacaaagtgcgttttctctctctctctctctctctctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctctgattcatgacttgcaacaaagtgcgttttctctctctctctctctctctctct 262
Query: 365 ctctctctctctctctctctctccctctctccccctccctccctccctccctccctcccc 424
||| ||| ||||| ||||||||||| |||||||||||||
Sbjct: 261 ctc-------------------ccc---ctccc--tccctccctccttccctccctcccc 226
Query: 425 caacacctcccacccccctcatgtttgatactatgtccttgtttcccctcaaagatatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 caacacctcccacccccctcatgtttgatactatgtccttgtttcccctcaaagatatct 166
Query: 485 attttcttaataaatatttgtgccatgatctttcgctggtgttattgacccaccagccat 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 165 attttcttaataaatatttgtgccatgatctttcgctggtgttattgacccaccagccgt 106
Query: 545 cttagctccctgggcagacatctctaattcttcctaacattcctcccactgatactacgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cttagctccctgggcagacatctctaattcttcctaacattcctcccactgatactacgt 46
Query: 605 ccagccacagacatttatcacatggcct 632
||||||||||||||||||||||||||||
Sbjct: 45 ccagccacagacatttatcacatggcct 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_l17.g1 MSMg01no533_l17.g1 CHROMAT_FILE:
MSMg01no533_l17.g1 PHD_FILE: MSMg01no533_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:01 2005
(671 letters)
>mm_chr15_12228394_12229464
Length = 1071
Score = 1266 bits (655), Expect = 0.0
Identities = 667/671 (99%)
Strand = Plus / Plus
Query: 1 cacgatgtgtgtttgtgatgtatcttttagggaatcattttgattggttggttgaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgatgtgtgtttgtgatgtatcttttagggaatcattttgattggttggttgaaatac 260
Query: 61 tgggatcaaaccaaggccttgattatgttaagtgcgattctgctgaggttatacccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggatcaaaccaaggccttgattatgttaagtgcgattctgctgaggttatacccagcc 320
Query: 121 ctttaaaacagtcttattttgaagcaggatcttactaactttgtgactaggctagcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaaaacagtcttattttgaagcaggatcttactaactttgtgactaggctagcccca 380
Query: 181 gccttctgtctgctatcgattgccatataagctggggttgcatgtatgtaccaccatggg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttctgtctgctatcgattgccacataagctggggttgcatgtatgtaccaccatggg 440
Query: 241 aataacttttctttttgtttatgttttttgtttgcttgctttctttttttaaagatttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacttttctttttgtttatgttttttgtttgcttgctttctttttttaaagatttac 500
Query: 301 ttattttatgtatatgagtgcactgtagatgtacagatggttgtgagccttcatgtgttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ttattttatgtatatgagtgcactgtagatgtacagatggttgtgagccttcacgtgttg 560
Query: 361 ttgggaattgaaattttttaggacctctgctcgatctggtcagccccgctcactccggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggaattgaaattttttaggacctctgctcgatctggtcagccccgctcactccggtc 620
Query: 421 aactctgctcactcagtccctgctcacttgggcccaacgatttatttattatgatatata 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 aactctgctcactcagtccctgctcacttgggcccaacgatttatttattattatatata 680
Query: 481 ggtacattgtagctgtcttcagatgcccagaagagggcatcagatctcattacaggtggt 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtatattgtagctgtcttcagatgcccagaagagggcatcagatctcattacaggtggt 740
Query: 541 tgtgagccaccatgtggctgggatttgaacacaggaccttcgttagaatagtcagtgctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgagccaccatgtggctgggatttgaacacaggaccttcgttagaatagtcagtgctg 800
Query: 601 ttacccattgagccatcttgccaatcctgtttgtttgttttcaagactggctgccctgga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttacccattgagccatcttgccaatcctgtttgtttgttttcaagactggctgccctgga 860
Query: 661 attcactctgt 671
|||||||||||
Sbjct: 861 attcactctgt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
