Query= MSMg01no535_e20.b1 MSMg01no535_e20.b1 CHROMAT_FILE:
MSMg01no535_e20.b1 PHD_FILE: MSMg01no535_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:05 2005
(664 letters)
>mm_chr15_91594794_91595855
Length = 1062
Score = 1098 bits (568), Expect = 0.0
Identities = 637/660 (96%), Gaps = 2/660 (0%)
Strand = Plus / Minus
Query: 5 gaattctctacaaagttagaatatactcctcccccatgatgccctgttcatttaaactct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattctctacaaagttagaatatactcctcccccatgatgccctgttcatttaaactct 803
Query: 65 cttggaaactcacttttccctttaaacttccattatacaatataactgctaaattgccaa 124
|||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 802 cttggaaactcactttcccccttaaacttccattatacaatataagtgctaaattgccaa 743
Query: 125 gtaaagatagatgcacacatgcacacactgctttaccattaatctgcaccaaaaataatg 184
|| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 742 gtgaagatggatgcacacatgcacacactgctttaccattaatctgtaccaaaaacaatg 683
Query: 185 tgcatgttaagccaaatagccactatatgcatgaaatcatttatctttttaaattttaat 244
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 682 tgcatgttaagccaaatagccactatatgcatgaaatcatttatccttttaaatattaat 623
Query: 245 caactgcagcttttctttcaaaatatatgtcatgtgttgccaaaaagcttaccaaagctg 304
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caactgcaacttttcttttaaaatatatgtcatgtgttgccaaaaagcttaccaaagctg 563
Query: 305 agagttaaacattagtgtatccattacagaaaaaaaaaacattactttgtcaaccaaaat 364
| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 562 aaagttaaacattagtgtatctattacagaaaaaaaaaag-ttactttgtcaaccaaaat 504
Query: 365 aatgtaatctggtgaatttctattggattttttaaggtctgtcttacctgcttggaacca 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 aatgtaatctggtgaatttctattggattttt-aaggtctgtcttacctgcttggaacca 445
Query: 425 gaagatattcttcccctattggcaatgcgatctgaaatttttctaatagtttaaagtatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagatattcttcccctattggcaatgcgatctgaaatttttctaatagtttaaagtatt 385
Query: 485 gcatcatgtagttctttgggaaccgctttttctttgaaaggaacttttccacatctctcc 544
||||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 384 gcatcatatagttcttcgggaatcgcttcttctttgaaaggaatttttccacatctctcc 325
Query: 545 gggaaatgatgcccttgggatgtttcagacagccgtccaccttcactgtcaagatctgaa 604
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 gggaaatgatgcccttaggatgtttcagacagccgtctaccttcactgtcaagatctgaa 265
Query: 605 agattccaactcacgatcactgtctagttagaacagtcaggcaagatcaaatttctgccg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agattccaactcacgatcactgtctagttagaacagtcaggcaagatcaaatttctgccg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1062
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1052
Effective search space: 688008
Effective search space used: 688008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_e20.g1 MSMg01no535_e20.g1 CHROMAT_FILE:
MSMg01no535_e20.g1 PHD_FILE: MSMg01no535_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:05 2005
(608 letters)
>mm_chr15_91443723_91444729
Length = 1007
Score = 1091 bits (564), Expect = 0.0
Identities = 597/608 (98%), Gaps = 1/608 (0%)
Strand = Plus / Plus
Query: 1 taaagaatctgaatagctggtatgacctagataaaatgtaaagtttaaaactttatttga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagaatctgaatagctggtatgacctagataaaatgtaaagtttaaaactttatttg- 259
Query: 61 ctttatagtcccaacagatgctctaatatttgaagatacagacacataagtcttcttggg 120
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 ctttatagtcccaacagatgttctaatatttgaagatacggacacataagtcttcttggg 319
Query: 121 acttggtagtgtaggatttttctagaccactgaataatgataattgctaatatgaataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acttggtagtgtaggatttttctagaccactgaataatgataattgctaatatgaataat 379
Query: 181 ctgtgtaaggtgaaatttttccaaatactatgtgattgtctcacttatccctaaaagtga 240
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 380 ctgtgtaaggtgaaatttttccaaatactatgtgactgtctcacttgtccctaaaagtga 439
Query: 241 ctctgtaggcactgaggaaaccaacacccacgaagatgagcttcattgcttaaagcttga 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctctgtaggcaccaaggaaaccaacacccacgaagatgagcttcattgcttaaagcttga 499
Query: 301 agaccagattgttcagcaataccccatgctcagcaccctgcactcttagagcgggatgct 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 agaccagattgttcagcaataccccatgctcagcaccctgctctcttagagcgggatgct 559
Query: 361 ctgctatacccctacagcaatccatcatttgagcagcaagcccctgtctccattctatct 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgctatgcccctacagcaatccatcatttgagcagcaagcccctgtctccattctatct 619
Query: 421 ttgtagccagataactgatttctggattttggtgaatccctggacctgaattctggacct 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 ttgtagccagataactgatttctggattttggtgaatccctagacctgaattctggacct 679
Query: 481 agctagtcagggtctttagtcacatggtttctgcagttccttttccttgcttttgacttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agctagtcagggtctttagtcacatggtttctgcagttccttttccttgcttttgacttg 739
Query: 541 ggggagtcctgtgcctaaagattctcctcccctgcccggctgagtgtctgcagctcacct 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 ggggagtcctgtgcctaaagattctcctcccctgcctggctgagtgtctgcagctcacct 799
Query: 601 gtaattca 608
||||||||
Sbjct: 800 gtaattca 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
