BAC Information

Click to search

BAC

Clone NameMSMg01-535J10
Chromosome15 (Build37)
Map Location 28,311,397 - 28,453,133
singlet/doubletdoublet
Overlap geneDnahc5, EG382974
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneLOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535J10.T7 (MSMg01no535_j10.b1)MSMg01-535J10.TJ (MSMg01no535_j10.g1)
ACCAG603002AG603003
length789794
length of high quality
(start - end)		630 (47 - 676)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no535_j10.b1 PHD_FILE: MSMg01no535_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:27 2005CHROMAT_FILE: MSMg01no535_j10.g1 PHD_FILE: MSMg01no535_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,311,397 - 28,312,018)(28,452,665 - 28,453,133)
sequence
NCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGTTTAGCTGTACCCCAATTTTCAACTGGGTTACTTGGCTGA
TTGATGCCTAATTTTTGTGTCTTTGTATATTTTGGATATTAGTCCTCTGT
CAGACATAGGGTTATTGAAGATCTGTTCCCGTTCTGTAGGCGGCCATTTT
CTCCTATTGACGGTGTCCTTAGCCATCTTTTAAACATGGAGCTCATTTGG
CTTGTGAAGCAAGCTCTTCCAATGTTCACTTCACAATGCCAATGTTTTTG
TCTGGAAACTCAGAGGCTCTTCTAGAATTTTACTCAGATGTAGACTTCAT
TTGAACATCATCCCTTCCAGAAAGCCTCTTCTGTTGTAGCCACATGCACT
TCCCTATTAGAAACAAAAGCACCTCTTTTGTTTCTTTAAAAGGGAGAACT
GTCTTTAACAAACTTTTATGATCACTTAGCCCTGGTTTCTCTAGTAGTCT
CCTAAAAATATGGATACATGATTGTCCTGGTTAGTGTTTTGTCAACTTGA
CCTTGGCAGGTAGTGGTGGGTGTTGTAAGAAAGCAAGCAGAAGGAGCCAC
GTGGAAGGAGTCAGGAAACCTCACTCCTCCATGGGCTCTGCTTCAGTTCC
TGACTCCAGGTTCCTACTCTGCGTTGGGCATGTTTTCATCACAGTGATAG
AAACCATAATTCAGAACATGATTGTAGATTTAGTTTATGGGTTATTAAAA
GACAGCCGTTAGATGTGAAATATTTAGCATTTTTTTTTA

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAGATTGAGTACATCCTAGAAATGA
TGTTCCTCTAGGGAGACTTGTTTCAAGAAAACATCTGGTTGTCTATATTT
CCTTGAAAAAAACTTTGGGGCCAATGCAAGATAGATAGGCTGTTTTAAAA
TTAATTCTGTGTCCATTCAGAGATGATGCACCTTGCCCTCAAGAGAATGG
AGGTCCCAGGGAGGCTAGAGGTCAGGTGGGGTGGGGGGTGGGGACATCCA
CGTGGAGACAGGGGGTGGGAAGGAGGTATGGGATGTGGAACAGTCAAAGG
GTGGACAGGGGGAATAAAATATGGAGTGTAAAAGATTAATTAATTAATTA
ATAAAAATAAATAGAAAAACAACTCTAATATTAAAAACTAGGAAATTTTT
TCAAAGAAATAAAGAAGTTTCATGTAGAAAACTCTAGCAAATAAGAGCCC
AGGATTCTCCAAGTGTGGATTGTCAGTGGATTTTGCTTTACAGTTATTTG
GAAAATTTGGTTTTTCAAGTCAAGTATGTGTGATAACTCCCAATAGAACC
TTCATTACTATCTCTGATACTTTCTACCCAAAGCCTTCAGCTCCCATTCA
CTCTCTATGAATCAATATATAAATCTGGAAGAAGAATGGTTTTGAGTCCC
ACACTCCCATTAAAAACTATTAGGTGTTCCTAATAACTTTTGGATTATTT
TTGTGGGATTAATTTTATTCCCTAACCAAGAACACTAGTGTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_j10.b1 MSMg01no535_j10.b1 CHROMAT_FILE:
MSMg01no535_j10.b1 PHD_FILE: MSMg01no535_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:27 2005
         (630 letters)



>mm_chr15_28311193_28312222
          Length = 1030

 Score = 1187 bits (614), Expect = 0.0
 Identities = 620/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtttagctgtaccccaattttcaactgggttacttggctgattgatgccta 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtttagctgtaccccatttttcaactgggttacttggctgattgatgccta 264

                                                                       
Query: 65  atttttgtgtctttgtatattttggatattagtcctctgtcagacatagggttattgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttttgtgtctttgtatattttggatattagtcctctgtcagacatagggttattgaag 324

                                                                       
Query: 125 atctgttcccgttctgtaggcggccattttctcctattgacggtgtccttagccatcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctgttcccgttctgtaggcggccattttctcctattgacggtgtccttagccatcttt 384

                                                                       
Query: 185 taaacatggagctcatttggcttgtgaagcaagctcttccaatgttcacttcacaatgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacatggagctcatttggcttgtgaagcaagctcttccaatgttcacttcacaatgcc 444

                                                                       
Query: 245 aatgtttttgtctggaaactcagaggctcttctagaattttactcagatgtagacttcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgtttttgtctggaaactcagaggctcttctagaattttactcagatgtagacttcat 504

                                                                       
Query: 305 ttgaacatcatcccttccagaaagcctcttctgttgtagccacatgcacttccctattag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgaacatcatcccttccagaaagcctcttctgttgtagccacatgcacttccctattag 564

                                                                       
Query: 365 aaacaaaagcacctcttttgtttctttaaaagggagaactgtctttaacaaacttttatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaacaaaagcacctcttttgtttctttaaaagggagaactgtctttaacaaacttttatg 624

                                                                       
Query: 425 atcacttagccctggtttctctagtagtctcctaaaaatatggatacatgattgtcctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcacttagccctggtttctctagtagtctcctaaaaatatggatacatgattgtcctgg 684

                                                                       
Query: 485 ttagtgttttgtcaacttgaccttggcaggtagtggtgggtgttgtaagaaagcaagcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttagtgttttgtcaacttgaccttggcaggtagtggtgggtgttgtaagaaagcaagcag 744

                                                                       
Query: 545 aaggagccacgtggaaggagtcaggaaacctcactcctccatgggctctgcttcagttcc 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 aaggagccacgtggaaggagtcaggaaacctcactcctccatggcctctgcttcagttcc 804

                                 
Query: 605 tgactccaggttcctactctgc 626
           ||||||||||||||||||||||
Sbjct: 805 tgactccaggttcctactctgc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_j10.g1 MSMg01no535_j10.g1 CHROMAT_FILE:
MSMg01no535_j10.g1 PHD_FILE: MSMg01no535_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:27 2005
         (609 letters)



>mm_chr15_28452125_28453133
          Length = 1009

 Score =  861 bits (445), Expect = 0.0
 Identities = 463/469 (98%)
 Strand = Plus / Minus

                                                                        
Query: 141  cattcagagatgatgcaccttgccctcaagagaatggaggtcccagggaggctagaggtc 200
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 cattgagagatgatgcaccttgccctcaagagaatggaggtcccagggaggctagaggtc 950

                                                                        
Query: 201  aggtggggtggggggtggggacatccacgtggagacagggggtgggaaggaggtatggga 260
            |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 949  aggtggggtggggggtggggacatccacgtggagacagggagtgggaaggaagtatggga 890

                                                                        
Query: 261  tgtggaacagtcaaagggtggacagggggaataaaatatggagtgtaaaagattaattaa 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tgtggaacagtcaaagggtggacagggggaataaaatatggagtgtaaaagattaattaa 830

                                                                        
Query: 321  ttaattaataaaaataaatagaaaaacaactctaatattaaaaactaggaaattttttca 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  ttaattaataaaaataaatagaaaaacaactctaatattaaaaactaggaaattttttca 770

                                                                        
Query: 381  aagaaataaagaagtttcatgtagaaaactctagcaaataagagcccaggattctccaag 440
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 769  aagaaataaagaagtttcatgtagacaactctagcaaataagagcccaggattctccaag 710

                                                                        
Query: 441  tgtggattgtcagtggattttgctttacagttatttggaaaatttggtttttcaagtcaa 500
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 709  tgtggattgtcagtggattttgctttacagttatttgggaaatttggtttttcaagtcaa 650

                                                                        
Query: 501  gtatgtgtgataactcccaatagaaccttcattactatctctgatactttctacccaaag 560
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 649  gtatgtgtgataactcccaatagaaccttcattactatctctaatactttctacccaaag 590

                                                             
Query: 561  ccttcagctcccattcactctctatgaatcaatatataaatctggaaga 609
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ccttcagctcccattcactctctatgaatcaatatataaatctggaaga 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |