Query= MSMg01no535_m15.b1 MSMg01no535_m15.b1 CHROMAT_FILE:
MSMg01no535_m15.b1 PHD_FILE: MSMg01no535_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:42 2005
(532 letters)
>mm_chr15_99869941_99870873
Length = 933
Score = 978 bits (506), Expect = 0.0
Identities = 524/530 (98%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 4 ggaattcgtcacactctgcggcaacactttcacaaaaagatgacaagaaaaaaacaaaac 63
|||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 733 ggaattcgtcacactcggtggcaacactttcacaagaagatgacaagaaaaaaacaaaac 674
Query: 64 cttaagggaaatatattttaataaactacttcaaatg-ttttttttttttaaatctggta 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 673 cttaagggaaatatattttaataaactacttcaaatgtttttttttttttaaatctggta 614
Query: 123 aatattgtaaccaaaggtatcaccgggcaagcaacctaaaggttccctatcttcctaaac 182
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 613 aatattgtaaccaaaggtatcaccgggcaagcaacccaaaggtttcctatcttcctaaac 554
Query: 183 gcttccccactgattaattgaaaagtaatatgttgataattgcatgcaggtgaaaagatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcttccccactgattaattgaaaagtaatatgttgataattgcatgcaggtgaaaagatc 494
Query: 243 accaccctacacattgggaaagccttaaagggttattaaaattaattatttccttcaatc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accaccctacacattgggaaagccttaaagggttattaaaattaattatttccttcaatc 434
Query: 303 gagtaagatctgtgacactcaaacgcacttctggcttttcactataagtgattctcaaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagtaagatctgtgacactcaaacgcacttctggcttttcactataagtgattctcaaaa 374
Query: 363 aggtttgaaaaagcccagtgtcgtgacaagttaacaaaaagtcggaactagaacgctcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aggtttgaaaaagcccagtgtcgtgacaagttaacaaaaagtcggaactagaacgctcct 314
Query: 423 gggaacttgatcacattccttactcttttccaatcaacagtttttagtgaacttgaaaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggaacttgatcacattccttactcttttccaatcaacagtttttagtgaacttgaaaaa 254
Query: 483 tactggggagggtctttggcaaggaattcaacaatatgcaactctggaga 532
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tactggggagggtctttggcaaggaattcaacaatatgcaactctggaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_m15.g1 MSMg01no535_m15.g1 CHROMAT_FILE:
MSMg01no535_m15.g1 PHD_FILE: MSMg01no535_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:42 2005
(583 letters)
>mm_chr15_99676908_99677893
Length = 986
Score = 1044 bits (540), Expect = 0.0
Identities = 575/588 (97%), Gaps = 5/588 (0%)
Strand = Plus / Plus
Query: 1 ctccaagctgtaga--acacacgaagtgcacccctcacaccactcggctcccacctgcta 58
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctccaagctgtagaacacacacgaagtgcacccctcacaccactcggttcccacctgcta 260
Query: 59 acctggaggtggggttttcttgtcttagtaattaccaaaggagttccaacctttgtccag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctggaggtggggttttcttgtcttagtaattaccaaaggagttccaacctttgtccag 320
Query: 119 aagaggtgagatcagaaacaagtcaatacttccttatttgagtagggg-aaaaaaaatac 177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aagaggtgagatcagaaacaagtcaatacttccttatttgagtaggggaaaaaaaaatac 380
Query: 178 agatgaaacagctgttctcttggcaactacagagcaggactgatctgtagaatggattcg 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agatgaaacagctgttctcttggcaaccacagagcaggactgatctgtagaatggattcg 440
Query: 238 ttagaactgctctctctctcatcagccttgacaacagcacaatacagcgtgctgggccaa 297
||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 441 ttagaactgctctctctctcatcagccctgacaacagcacaatacagtgtgccgggccaa 500
Query: 298 gccctccagatcaccttctgagaccaccctccatacccgcaggcagtgtgctgtccttct 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctccagatcgccttctgagaccaccctccatacccgcaggcagtgtgctgtccttct 560
Query: 358 aatcaaagccttctctgaaaataacacggattagtttttgatgacttaacgctcgtgtat 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 aatcaaagccttctctgaaaataacacggattagtttttgatgacttaacgttcgtgtat 620
Query: 418 tcaagtacagttgctctcaccacttaaaccttgtggtttttttctcagacttatttaaaa 477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tcaagtacagttgctctcaccacttaaagcttgtggtttttttctcagacttatttaaaa 680
Query: 478 atttaaaaattcaggacaataggatgaataagatgaagaggaaatgacactcctacagac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaaaaattcaggacaataggatgaataagatgaagaggaaatgacactcctacagac 740
Query: 538 taagtcaaca--gtaagtgtggaagctttgaacacgtatgtatgtccc 583
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 taagtcaacacagtaagtgtggaagctttgaacacgtatgtatgtccc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 986
Length adjustment: 10
Effective length of query: 573
Effective length of database: 976
Effective search space: 559248
Effective search space used: 559248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
