Query= MSMg01no536_n08.b1 MSMg01no536_n08.b1 CHROMAT_FILE:
MSMg01no536_n08.b1 PHD_FILE: MSMg01no536_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:03 2005
(449 letters)
>mm_chr15_7937321_7938169
Length = 849
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%), Gaps = 2/439 (0%)
Strand = Plus / Minus
Query: 12 gaattcagagtgttctattggagagaaaggtggccttaca-tagaatatgatgtatcacc 70
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 526 gaattcagagtgtactattggagagaaaggtggcctta-agtagaatatgatgtatcacc 468
Query: 71 cgtgtgatacgctaggtggtgcgcagcttggaagcccttgccggagaagctagtaagtgc 130
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cgtgtgatacgctaggtggtgagcagcttggaagcccttgccggagaagctagtaagtgc 408
Query: 131 ttgcgtagacctgaacccgagcaaaggctcccacgtgatgtgccttatttaaataggtgc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttgcgtagacctgaacccgagcaaaggctcccacgtgatgtgccttatttaaataggtgc 348
Query: 191 tttcctgcatgactgtagcccagaagctgctattcagttctctgtgttctcaactatgtt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttcctgcatgactgtagcccagaagctgctattcagttctctgtgttctcaactatgtt 288
Query: 251 ctttgaaggcaccccattaggagaggtgctgtcatgaaggagcaagcgaatccatcactg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctttgaaggcaccccattaggagaggtgctgtcatgaaggagcaagcgaatccatcactg 228
Query: 311 catgtaccccactgacagcttcagatggatgtgggtttgtagctgttttgcttggtgctt 370
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 227 catgtaccccactgaccgcttcagacggatgtgggtttgtggctgttttgcttggtgctt 168
Query: 371 tactttcaacacttggccagtgtttggcatacaactagtatataaatatcgtctgactga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tactttcaacacttggccagtgtttggcatacaactagtatataaatatcgtctgactga 108
Query: 431 ctgaaagacaggaagaagt 449
|||||||||||||||||||
Sbjct: 107 ctgaaagacaggaagaagt 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_n08.g1 MSMg01no536_n08.g1 CHROMAT_FILE:
MSMg01no536_n08.g1 PHD_FILE: MSMg01no536_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:03 2005
(522 letters)
>mm_chr15_7753104_7754021
Length = 918
Score = 973 bits (503), Expect = 0.0
Identities = 515/521 (98%), Gaps = 4/521 (0%)
Strand = Plus / Plus
Query: 1 tctacacttctagagactgccggcactgcacatatggtgtgtcagtgtgaacgatgccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacacttctagagactgccggcactgcacatatggtgtgtcagtgtgaacgatgccct 260
Query: 61 ggtggacggatggagagaagcatgaactcgttcagccgactatgcttccacccagaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggacggatggagagaagcatgaactcgttcagccgactatgcttccacccagaacac 320
Query: 121 tgctgcgggacagtaattcactaaatcggaccccggtggctgggaagaacaagaatagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgcgggacagtaattcactaaatcggaccccggtggctgggaagaacaagaatagta 380
Query: 181 tgatttattcccggagattactttgcaaactgaaaatcacgtttattacctcctctgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttattcccggagattactttgcaaactgaaaatcacgtttattacctcctctgttc 440
Query: 241 acacagtatcccagtcagagggagagaagtagcagcatggtgaggcagggaggaggaggt 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 acacagtatcccagtcagagggagagaagtagcaacatggtgaggcagggaggaggaggt 500
Query: 301 gaggccaggatgctgcctttgtttgctttagcggccacagccggctaagggcagagctgc 360
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 501 gaggccaggatgctgcctttg----ctgtagcggccacagccggctaagggcagagctgc 556
Query: 361 ctctctgagtacctgagcatcctgcaggacttctgcccagttgggatttggggcttttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctctctgagtacctgagcatcctgcaggacttctgcccagttgggatttggggcttttga 616
Query: 421 gttcaactttcagctaaatggggctagcattccagtaaagtgagtgaggtcccaggatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gttcaactttcagctaaatggggctagcattccagtaaagtgagtgaggtcccaggatgt 676
Query: 481 aaaataaggaaccccactcccaacgttgctgctcattcagc 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaataaggaaccccactcccaacgttgctgctcattcagc 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 918
Length adjustment: 10
Effective length of query: 512
Effective length of database: 908
Effective search space: 464896
Effective search space used: 464896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
