Query= MSMg01no537_l10.b1 MSMg01no537_l10.b1 CHROMAT_FILE:
MSMg01no537_l10.b1 PHD_FILE: MSMg01no537_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:09 2005
(623 letters)
>mm_chr15_23038501_23039523
Length = 1023
Score = 967 bits (500), Expect = 0.0
Identities = 512/516 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagtaacctcccagttcggttatgctttttctgtcaaagatatcacaatcacca 64
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaatttaagtaaccacccagttcggttatgctttttctgtcaaagatatcacaatcacca 457
Query: 65 gtatagagtcctagtgtaaatggattcatgcaacacgtgattcatggatatgtccactaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtatagagtcctagtgtaaatggattcatgcaacacgtgattcatggatatgtccactaa 397
Query: 125 ggccatgtgaactgattggcaaataatatgcttttcaatttgggtctaaatcagactatc 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 396 ggccatgtgaactgattggcaaataatatggttttcaatttgggtctaaatcagactatc 337
Query: 185 taaatctataaaataatatcattaattcaagaaaatcatcatcattattatcattacatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taaatctataaaataatatcattaattcaagaaaatcatcatcattattatcattacatg 277
Query: 245 catacacatacatactattttatttagtttcttataatcttactgatttcttttttcact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 catacacatacatactattttatttagtttcttataatcttactgatttcttttttcact 217
Query: 305 ctcaaggtttggttttggttttgagaggtgttctctctgtagaaccctggctgtcctcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctcaaggtttggttttggttttgagaggtgttctctctgtagaaccctggctgtcctcaa 157
Query: 365 actcagtgcttcgtagatcaaccgggctttgaaccttcaaaaatgttcctgcccctgcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 actcagtgcttcgtagatcaaccgggctttgaaccttcaaaaatgttcctgcccctgcct 97
Query: 425 ccaaagaacgggactaaatgtgtgctgcttttcttcttgtaaaaaaatcacaaaatgaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 96 ccaaagaacgggactaaatgtgtgctgcttttcttcttgtaaaaaaatcacaaaatggaa 37
Query: 485 aaaagtaagagaagtatattcacatgatattatatg 520
||||||||||||||||||||||||||||||||||||
Sbjct: 36 aaaagtaagagaagtatattcacatgatattatatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_l10.g1 MSMg01no537_l10.g1 CHROMAT_FILE:
MSMg01no537_l10.g1 PHD_FILE: MSMg01no537_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:09 2005
(486 letters)
>mm_chr15_22907374_22908259
Length = 886
Score = 843 bits (436), Expect = 0.0
Identities = 477/498 (95%), Gaps = 14/498 (2%)
Strand = Plus / Plus
Query: 1 accttactgctgcagttatttctgtcaatttttccccaaatttagtgtttttctgaagtc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 accttactgctgcagttatttctgtcaatctttccccaaatttagtgtttttctgaagtc 260
Query: 61 atgaaacatgtctgcattaccacataacattagaataactggaagattgctatgtttttt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atgaaacatgtctgcattaccacataacattaaaataactggaagattgctatgtttttt 320
Query: 121 aataaacttaatattttcttttttataaaaataaggaagtgtaatcaaagattacagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaacttaatattttcttttttataaaaataaggaagtgtaatcaaagattacagaaa 380
Query: 181 ttacctctaaaagaaaatgacagtgagtgactcagtagtaaacacatagttattatttat 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttacctctaaaagaaaatgacagtgagtgactcagtagtaaaaacatagttattatttat 440
Query: 241 ttggtaaactacataggcagtagttatgtatttttagtcctttacctcctacctgaaata 300
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 441 ttggtaaactacataggcagtagttatgtattttt-gtcctttacatcctacctgaaata 499
Query: 301 tatctaattcagcatttctcaaggaaagtgttttttgtatgtaataaataacagtgagat 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatctaattcagcgtttctcaaggaaagtgttttttgtatgtaataaataacagtgagat 559
Query: 361 aatttttgggtgtgaagctgtgcttatgtgactcatgcattta-ttactgtatatatata 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 aatttttgggtgtgaagctgtgcttatgtgactcatgcatttaattactgtatatatata 619
Query: 420 tacatatatatatgtatatatatatat------------gtgtgtgtgtgtgtgtgtgtg 467
|| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 620 tatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtg 679
Query: 468 tgtgtgtgtgtgtgtgtg 485
||||||||||||||||||
Sbjct: 680 tgtgtgtgtgtgtgtgtg 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
