BAC Information

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BAC

Clone NameMSMg01-540M13
Chromosome15 (Build37)
Map Location 10,319,997 - 10,320,635
singlet/doubletsinglet
Overlap geneAgxt2
Upstream geneLOC383094, Capsl, Il7r, C230086A09Rik, Prlr
Downstream gene4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540M13.T7 (MSMg01no540_m13.b1)MSMg01-540M13.TJ (MSMg01no540_m13.g1)
ACCAG606954AG606955
length753737
length of high quality
(start - end)
537 (48 - 584)639 (78 - 716)
definitionCHROMAT_FILE: MSMg01no540_m13.b1 PHD_FILE: MSMg01no540_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:11 2005CHROMAT_FILE: MSMg01no540_m13.g1 PHD_FILE: MSMg01no540_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACATATGCCCGCTTTTATTGTGCAAACCTTGCTCCTTAATT
TTAAACTATTGGTTGACTAAAGATGCCTACAACCAGTAGCTAAGCAGGAG
AGTAGGCAGGGCTTTGGTTTCCAGGGCTGGAGGTCTGAAGCAGAGAGCAC
TAGAAGAGAAGGAGGGAAGAAGGAGCCATGGGGTAGGTGAATCATGAGAG
CGCATGACCATGAGGGCCAGCCCGTGGAGTAAGAGTAGCCCAGGTAGAAC
ATGGCAAGTGATATCTTGGGATTATTGACAGGGAGATAGACAAAATAGCA
CAGAGGGTTGATATCTGCCCATCTCTAATGCTTTAAAGTTTATTATAAAT
ATAAAGGTTTTATGTCTTTTATTTAGGAAGTAAATGACGTAAGGTGGGGT
AGAAACCGACAAATAATTTTTACCACAACAGCTCAGACCTTGGTAAACTT
ACTAATTTGAGGCAGAACTACCCCCTACCTTTGGCTCACTTTCTTTCTTT
CTCTCTTCCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTANCT
TANCNTCNCTTCTCTTCTCGTCTCTTCTCTTCTCTCTTCCTTTCCTTTCC
TTTCCTTTCCTTTTTTTTTTTTTGAGACAGGGTTTTTCTGTGTAAGTCTC
GCCTGCCTGGTTTTTAATCTAGAGGACTGGCTTGGCTTGCTCTCCCAAAT
CAT
NCCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAAATCAGAGCTTGAGAAT
TTTCCAAGAGATGTGCTCTCGTGACCTACTCTTGTTTTTTTCTTCACCAC
CCCAATTTCATGGCTTTCAAGAACTTAACAGGGTACAAGTTTAAGAGAGA
CTGCTGTTAACCACTGACAGGTTTATAACAGACAGAGCAAGAACACACTG
TCCCAGCCCTTCACTGCCACAGCCCCAGCTGTGACACTCCCTCCTATGAG
TCCTTCATCCCTGTTGACACTAGGATGTATGGACTACAGAATGATTCGAT
GTCCTACTGTGCACCTGTCCCTATGAAACTCGTGATTCTCAAGCAACTGA
TTGTATTTTTTCCTGCACAATTTTGTGTATTGTCCAGGAAATGTTCTGTT
TCACTATATGTGCCATTTTTATGCCACTTAGATAGATGAAGAGGAGAAAG
AACACAGGATGAAAGAAAAACTATATGAAATTCCTACATTGTTTCATTTG
GGTCTGTTAATCTGGTCTATTGCTAGGAAGTAAGACTTGGCCATTCAGCC
CAGGTCTGTCAGACTTGCACATTTCAGATCTTCTGCTATATTGGTCTCTG
TCACCTAAGAATAACTTCTGAAATCAGCCCCTCTCCTATACCAGTCACAA
TCACCTAATGACAACCAAGAACTTGTTTACAGCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_m13.g1 MSMg01no540_m13.g1 CHROMAT_FILE:
MSMg01no540_m13.g1 PHD_FILE: MSMg01no540_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:11 2005
         (639 letters)



>mm_chr15_10319797_10320835
          Length = 1039

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaaatcagagcttgagaattttccaagagatgtgctctcgtgacctactcttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaaaatcagagcttgagaattttccaagagatgtgctctcgtgacctactcttgttt 260

                                                                       
Query: 61  ttttcttcaccaccccaatttcatggctttcaagaacttaacagggtacaagtttaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcttcaccaccccaatttcatggctttcaagaacttaacagggtacaagtttaagag 320

                                                                       
Query: 121 agactgctgttaaccactgacaggtttataacagacagagcaagaacacactgtcccagc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactgctgttaaccactgacaggtttataacagacagagcaagaacacactgtcccagc 380

                                                                       
Query: 181 ccttcactgccacagccccagctgtgacactccctcctatgagtccttcatccctgttga 240
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 381 ccttcactgccacagccccagctgtgccactccctcctgtgagtccttcatccctgttga 440

                                                                       
Query: 241 cactaggatgtatggactacagaatgattcgatgtcctactgtgcacctgtccctatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactaggatgtatggactacagaatgattcgatgtcctactgtgcacctgtccctatgaa 500

                                                                       
Query: 301 actcgtgattctcaagcaactgattgtattttttcctgcacaattttgtgtattgtccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcgtgattctcaagcaactgattgtattttttcctgcacaattttgtgtattgtccag 560

                                                                       
Query: 361 gaaatgttctgtttcactatatgtgccatttttatgccacttagatagatgaagaggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgttctgtttcactatatgtgccatttttatgccacttagatagatgaagaggaga 620

                                                                       
Query: 421 aagaacacaggatgaaagaaaaactatatgaaattcctacattgtttcatttgggtctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaacacaggatgaaagaaaaactatatgaaattcctacattgtttcatttgggtctgt 680

                                                                       
Query: 481 taatctggtctattgctaggaagtaagacttggccattcagcccaggtctgtcagacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 taatctggtctattgctaggaagtaagacttggccattcagcccaggtctgccagacttg 740

                                                                       
Query: 541 cacatttcagatcttctgctatattggtctctgtcacctaagaataacttctgaaatcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacatttcagatcttctgctatattggtctctgtcacctaagaataacttctgaaatcag 800

                                                  
Query: 601 cccctctcctataccagtcacaatcacctaatgacaacc 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccctctcctataccagtcacaatcacctaatgacaacc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)