Query= MSMg01no541_o23.b1 MSMg01no541_o23.b1 CHROMAT_FILE:
MSMg01no541_o23.b1 PHD_FILE: MSMg01no541_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:47 2005
(607 letters)
>mm_chr15_75751497_75752501
Length = 1005
Score = 1048 bits (542), Expect = 0.0
Identities = 593/614 (96%), Gaps = 13/614 (2%)
Strand = Plus / Plus
Query: 3 gaattcaccctactgtcccttggggtaccacgtgcgcccctcccgccaaggcttacgaac 62
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaccctactggcccttggtgtaccacgtgcgcccctcccgccaaggcttacgaac 262
Query: 63 tcctcccattagaacgaaagctcccccagccaggcctcgcctccccacctgctcggatga 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 263 tcctcccattagaacgaaagctcccccagccaggcctcgcct-cccacctgcttggatga 321
Query: 123 ggcctcgggcaatggcctccgccatgcggcctgcacccacgaagcccacacgccgaggtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcctcgggcaatggcctccgccatgcggcctgcacccacgaagcccacacgccgaggtt 381
Query: 183 cagacattgtcgccgccatcctgctctgagctggccttctctcgtccttgcggcagcggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagacattgtcgccgccatcctgctctgagctggccttctctcgtccttgcggcagcggg 441
Query: 243 tcccgcccactagaactgctttgaccgacagaagcgactgggcgggtttggggaggacgg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 442 tcccgcccactagaactgctttgaccgacagaagcgactgggcgggtttggg-aggacag 500
Query: 303 aggggcggggcggggcggggcggggcgggcgcagacacttggattttgacgcttgaggcg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggcggggcggggcggggcggggcgggcgcagacacttggattttgacgcttgaggcg 560
Query: 363 ggattttccccaagctttgttaaaccattggtcagtgattttgctgaggggaaagaagag 422
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatttcccccaagctttggtaaaccattggtcagtgattttgctgaggggaaagaagag 620
Query: 423 aaaggaaggggagctagtcctaagcaggctgtctaattcctcctgagaagcctgaagcta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggaaggggagctagtcctaagcaggctgtctaattcctcctgagaagcctgaagcta 680
Query: 483 gctag--tctctccaaaacccttacagagagatttagagggggagaaaaa-aaaccaaaa 539
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 681 gctagagtctctccaaaacccttacagagagatttagagggggagaaaaacaaa--aaaa 738
Query: 540 a----aac--aaaaacacttgaaccaccccaggatgggcctggggtgtaaggtaggtact 593
| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 739 acaaaaaccaaaaaacgcttgaaccactccaggatgggcctggggtgtaaggtaggtact 798
Query: 594 ccaagctcttgcct 607
||||||||||||||
Sbjct: 799 ccaagctcttgcct 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space: 594015
Effective search space used: 594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_o23.g1 MSMg01no541_o23.g1 CHROMAT_FILE:
MSMg01no541_o23.g1 PHD_FILE: MSMg01no541_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:47 2005
(460 letters)
>mm_chr15_75944845_75945704
Length = 860
Score = 832 bits (430), Expect = 0.0
Identities = 446/460 (96%), Gaps = 14/460 (3%)
Strand = Plus / Minus
Query: 1 caggatagccagagctacacagctacacagagaagccatgtctcagaaaaccaaggagag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caggatagccagagctacacagctacacagagaagccatgtctcagaaaaccaag----- 721
Query: 61 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ---------gagagagagagagagagagagagagagagagagagagagagagagagagag 670
Query: 121 agagagagaagtgtaagagcacaaggtgatctgtattcgaaggatgacaccaggactggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agagagagaagtgtaagagcacaaggtgatctgtattcgaaggatgacaccaggactggc 610
Query: 181 tggctcaggacataggttttagcaatctaggggaacaggccaagaatctctggattcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggctcaggacataggttttagcaatctaggggaacaggccaagaatctctggattcatt 550
Query: 241 gggcacacagattcaaagtctgtctgctaagttccactgtgcaaatgtgtgttggggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gggcacacagattcaaagtctgtctgctaagttccactgtgcaaatgtgtgttggggagg 490
Query: 301 ggcaggcaggcgcctcccagagttcatgctaggaggaacccttaatgaacttgtgggcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggcaggcaggcgcctcccagagttcatgctaggaggaacccttaatgaacttgtgggcag 430
Query: 361 agagaatgttctggcaatgctgaggctgtgggctaagaagaggacacagtgtgcagactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agagaatgttctggcaatgctgaggctgtgggctaagaagaggacacagtgtgcagactc 370
Query: 421 gggccacagggctgttgtcttctctttgagcaagtctgcc 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gggccacagggctgttgtcttctctttgagcaagtctgcc 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 41
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
