Query= MSMg01no542_e18.b1 MSMg01no542_e18.b1 CHROMAT_FILE:
MSMg01no542_e18.b1 PHD_FILE: MSMg01no542_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
(708 letters)
>mm_chr15_14194472_14195579
Length = 1108
Score = 1263 bits (653), Expect = 0.0
Identities = 688/705 (97%), Gaps = 9/705 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactgttcttactctaccatcctgaaacaattgtcccaatagaatagtagaatg 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaactcactgttcttactctaccatcctgaaacaattgtcccaatagaatagtagaatg 272
Query: 64 tcctcttgaatactcataaagaacacttgaagagtagaaagaccctataaactgagatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcctcttgaatactcataaagaacacttgaagagtagaaagaccctataaactgagatat 332
Query: 124 gtttcctcaggattttctttagttcctctaaatccttttacatcataaaaatattgtgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtttcctcaggattttctttagttcctctaaatccttttacatcataaaaatattgtgat 392
Query: 184 ttctttgaaagatcaattttcttcctccctgggtccattaatccagggatacatttagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttctttgaaagatcaattttcttcctccctgggtccattaatccagggatacatttagaa 452
Query: 244 tagacaccaccaaattcttctcacattgaaccactctaaatatttttaatctttgtccct 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagacaccaccaaatacttctcacattgaaccactctaaatatttttaatctttgtccct 512
Query: 304 gagaccttgtgtttgtattggcctagatattatatattgaagtggaagaatgtttctacc 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 513 gagaccttgtgtttgtattggcctagatattatatattcaagtggaagaatgtttctacc 572
Query: 364 tacatacacactaattcttttgaactgaatagtaagtccagtactggcttactttggctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tacatacacactaattcttttgaactgaatagtaagtccagtactggcttactttggctt 632
Query: 424 ctcacatacctgccatgacaggcaatcaaaagtgttgctgtattcactcaattttgatcc 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 633 ctcacatacctgccatgacaggcaatcaaaagtgttgctgtatt---------ttgatcc 683
Query: 484 agagcactaatgttgtatgagactgataccacacatcacagaggaagagaagttatagaa 543
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagcactaacgttgtatgagactgataccacacatcacagaggaagagaagttatagaa 743
Query: 544 caatggaggctccccaagttatcctgcagcattatacactcctataatgaaagtcaatga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caatggaggctccccaagttatcctgcagcattatacactcctataatgaaagtcaatga 803
Query: 604 aaacgaggaaaaggaaacaaaacaaaacaaacaaaagcccacacggaacttaaaaatgtc 663
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 804 aaacaaggaaaaggaaacaaaacaaaacaaacaaaagcccacacggaacttaaaaatggc 863
Query: 664 tcctttgtcaaaaaagaaggcagtggtgtgtgcctcacacactga 708
||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 864 tcctttgtctaaaatgaaggcagtggtgtgtgcctcacacactga 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_e18.g1 MSMg01no542_e18.g1 CHROMAT_FILE:
MSMg01no542_e18.g1 PHD_FILE: MSMg01no542_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
(656 letters)
>mm_chr15_14354476_14355531
Length = 1056
Score = 1261 bits (652), Expect = 0.0
Identities = 655/656 (99%)
Strand = Plus / Minus
Query: 1 ctttgaattatcttaagctttataaacaagggaaagcttaagctacccagagaaaagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ctttgaattatcttaagctttataaacaagggaaagcttaagctacccagagaaaagtac 953
Query: 61 ttataatgtgaacaaaccacaggaagctaataaaacatgttacactcatctttagtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttataatgtgaacaaaccacaggaagctaataaaacatgttacactcatctttagtgtgt 893
Query: 121 atgtatatttttatacgtttgagtatgcatgtgtttgtacacatgtatctgcgtgtgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 atgtatatttttatacgtttgagtatgcatgtgtttgtacacatgtatctgcgtgtgtct 833
Query: 181 ctgtttgtgtacatgtatacaataattccccgtgctcaaacagaagaacttaagatcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ctgtttgtgtacatgtatacaataattccccgtgctcaaacagaagaacttaagatcatt 773
Query: 241 gctcctgcagaattcattttattccctagctaggaatgacttcttctctaggttcttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gctcctgcagaattcattttattccctagctaggaatgacttcttctctaggttcttttt 713
Query: 301 atatctccttttctatcaaaatacgtcatcttaaaattgcatctgtcagtctcttatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atatctccttttctatcaaaatacgtcatcttaaaattgcatctgtcagtctcttatgtt 653
Query: 361 tctcagtgaattgaagaatataaatatagctcctaagtagttatggttttttgagtcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tctcagtgaattgaagaatataaatatagctcctaagtagttatggttttttgagtcttt 593
Query: 421 aaataatgaattaagttgacttccttagcaagaagctagacagcaactacattgtaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaataatgaattaagttgacttccttagcaagaagctagacagcaactacattgtaggaa 533
Query: 481 gaaatgtggttattaaaggactacatagtgaacctttttaaataagagagtgagaaagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaaatgtggttattaaaggactacatagtgaacctttttaaataagagagtgagaaagag 473
Query: 541 atgctcaggtatatgttcgcaaagtagtgggctagtagtggactctttctaagaagtgta 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atgctcaggtatatgtttgcaaagtagtgggctagtagtggactctttctaagaagtgta 413
Query: 601 agttcacacacactcctttcctttcctttcctttcctttcctttcctttcctttcc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agttcacacacactcctttcctttcctttcctttcctttcctttcctttcctttcc 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
