BAC Information

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BAC

Clone NameMSMg01-542H11
Chromosome15 (Build37)
Map Location 100,929,155 - 101,114,856
singlet/doubletdoublet
Overlap geneAnkrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik
Upstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
Downstream gene6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542H11.T7 (MSMg01no542_h11.b1)MSMg01-542H11.TJ (MSMg01no542_h11.g1)
ACCAG608234AG608235
length768759
length of high quality
(start - end)		607 (47 - 653)633 (74 - 706)
definitionCHROMAT_FILE: MSMg01no542_h11.b1 PHD_FILE: MSMg01no542_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:30 2005CHROMAT_FILE: MSMg01no542_h11.g1 PHD_FILE: MSMg01no542_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,114,254 - 101,114,856)(100,929,155 - 100,929,784)
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGACCGGACTGGACGTCAGGATCGCTGCCCGCGACCTCGCGCCG
TCTCGGGACAGCAGCGCAGACGACGAGGACCGAGTCCAGACCCTACAGAC
GCGGGTCCAGGCCTCCGCTTCCTCCGCCTGAGCGGCGCGCGGGCCGGAAG
TTTTGCCCGTTCGGAGGGTGGAACCGGAAGGAACCATCCGCGCCCACGGC
GGGTGCTGGCCAGGCTCGGCTCGACCCAGCCGGACGCCGCCGCAGCCACG
GCATCGGGAAGCTCGCACGAGCTATATACTCTCTCATAATGCCACGTAAC
TTTAGTACTTGGGTGTTTTTTCTTGTTTGTCCTTCGGGCCCTAGGCTCGT
TAAGAGGAACCCCCCCTCCTTTGGACGAGTCCATTCACTCCCACCACCGA
GAACGTTGTTTGGGCTGGGACAACTCACTTCCGCCATCGAGACGAGAGGG
ACAGAGGGGACGGATGGACTCTGCGCTGCCCCTGGTGGCCAGGCGGAGTC
GGCGGCGGAGAGCCCTCCCCTGCGACCCATTGTGGGGGCCCCCATTCGGA
GCTGACAACCTTAAGACAAGAGAGATCCCGAGATCAAGGCCATAACATCT
GAGAGGCGCCTGGGGATGAGCGCACGCCGGTGTGCTGTAGGATACTGAGC
GGATGGTGAATCTGTGTTGGCCCAAAGTGCACAACAGTCCGGGGTTCCTG
AACTCAGACCCACAGGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCCCCTTCTTGGCCTGAATCTTGTC
CCCGTGTCTTGAAGACAGAGTCTGACCCCAGATTTGTTGTACAACTGAAA
AAGCTCTCTCAGTTCTCCTCAGTTCACATAGCAACAAATAGACGTTTAAA
AACACTAATCCAGAAAACCGAGGGCACAAACACTAATCCAGAAAACCGAG
GCCACATGCTTTGCTCTCTCTGCTTGCCACCGACATGCTCCCCTCAGAAG
AAAGCCCAGCACCCCACATTGCCCCCACTCCCCATTCACTGCTTCTGCTT
CTTGAATTTGACAGGCTGGACCTGACTGGCCCCTTTTGCTGGTCCCCTCT
GCCGTGTTCCATATCGCAGAGGCAACGCCATCCTCTGTATCTACCGTTAT
AACTGCCACTGAACCTCACATGTGTGTCCTGTCTCTCCCACAGGACACGC
CAATTCTGTAACTACACTCCTCATTCACTTGTTTGGCAGTCAGTCTCATG
CCCTTGTCGGGCTCATTATCTGGTGGGGCAATGGAGTAAACCTTGGAGGC
ACTCCACACATATTCTGAACATTTAACCAATGGAGACATCCCTGAATACC
AAGCTGATTGCTGCTCCATTTGGCCACCTCCACCCAAAAGGGCTTCTCCC
GAGAGGAACCAACTGCAAGCTCTGTATACACCATGCTCCCAGAGACACCT
TACCTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_h11.b1 MSMg01no542_h11.b1 CHROMAT_FILE:
MSMg01no542_h11.b1 PHD_FILE: MSMg01no542_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:30 2005
         (607 letters)



>mm_chr15_101114050_101115056
          Length = 1007

 Score = 1112 bits (575), Expect = 0.0
 Identities = 596/603 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaccggactggacgtcaggatcgctgcccgcgacctcgcgccgtctcgggaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattctgaccggaccggacgtcaggatcgctgcccgcgacctcgcgccgtctcgggaca 748

                                                                       
Query: 65  gcagcgcagacgacgaggaccgagtccagaccctacagacgcgggtccaggcctccgctt 124
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 747 gcagtgcagacgacgaggaccgagtccagaccctacagacgccggtccaggcctccgctt 688

                                                                       
Query: 125 cctccgcctgagcggcgcgcgggccggaagttttgcccgttcggagggtggaaccggaag 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cctctgcctgagcggcgcgcgggccggaagttttgcccgttcggagggtggaaccggaag 628

                                                                       
Query: 185 gaaccatccgcgcccacggcgggtgctggccaggctcggctcgacccagccggacgccgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaaccatccgcgcccacggcgggtgctggccaggctcggctcgacccagccggacgccgc 568

                                                                       
Query: 245 cgcagccacggcatcgggaagctcgcacgagctatatactctctcataatgccacgtaac 304
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgcagccacgacatcaggaagctcgcacgagctatatactctctcataatgccacgtaac 508

                                                                       
Query: 305 tttagtacttgggtgttttttcttgtttgtccttcgggccctaggctcgttaagaggaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttagtacttgggtgttttttcttgtttgtccttcgggccctaggctcgttaagaggaac 448

                                                                       
Query: 365 cccccctcctttggacgagtccattcactcccaccaccgagaacgttgtttgggctggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cccccctcctttggacgagtccattcactcccaccaccgagaacgttgtttgggctggga 388

                                                                       
Query: 425 caactcacttccgccatcgagacgagagggacagaggggacggatggactctgcgctgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caactcacttccgccatcgagacgagagggacagaggggacggatggactctgcgctgcc 328

                                                                       
Query: 485 cctggtggccaggcggagtcggcggcggagagccctcccctgcgacccattgtgggggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctggtggccaggcggagtcggcggcggagagccctcccctgcgacccattgtgggggcc 268

                                                                       
Query: 545 cccattcggagctgacaaccttaagacaagagagatcccgagatcaaggccataacatct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cccattcggagctgacaaccttaagacaagagagatcccgagatcaaggccataacatct 208

              
Query: 605 gag 607
           |||
Sbjct: 207 gag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_h11.g1 MSMg01no542_h11.g1 CHROMAT_FILE:
MSMg01no542_h11.g1 PHD_FILE: MSMg01no542_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:31 2005
         (633 letters)



>mm_chr15_100928955_100929984
          Length = 1030

 Score = 1116 bits (577), Expect = 0.0
 Identities = 618/633 (97%), Gaps = 3/633 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccccttcttggcctgaatcttgtccccgtgtcttgaagacagagtctgaccccagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccccttcttggcctgaatcttgtccccgtgtcttgaagacagagtctgaccccagat 260

                                                                       
Query: 61  ttgttgtacaactgaaaaagctctctcagttctcctcagttcacatagcaacaaatagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgtacaactgaaaaagctctctcagttctcctcagttcacatagcaacaaatagac 320

                                                                       
Query: 121 gtttaaaaacactaatccagaaaaccgagggcacaaacactaatccagaaaaccgaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttaaaaacactaatccagaaaaccgagggcacaaacactaatccagaaaaccgaggcc 380

                                                                       
Query: 181 acatgctttgctctctctgcttgccaccgacatgctcccctcagaagaaagcccagcacc 240
           |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgctttgctttccctgcttaccaccgacatgctcccctcagaagaaagcccagcacc 440

                                                                       
Query: 241 ccacattgcccccactccccattcactgcttctgcttcttgaatttgacaggctggacct 300
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacattgccccc---ccccattcactgcttctgcttcttgaatttgacaggctggacct 497

                                                                       
Query: 301 gactggccccttttgctggtcccctctgccgtgttccatatcgcagaggcaacgccatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gactggccccttttgctggtcccctctgccgtgttccatatcgcagaggcaacgccatcc 557

                                                                       
Query: 361 tctgtatctaccgttataactgccactgaacctcacatgtgtgtcctgtctctcccacag 420
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actgcatctaccgttataactgccactgaacctcacatgtgtgtcctgtctctcccacag 617

                                                                       
Query: 421 gacacgccaattctgtaactacactcctcattcacttgtttggcagtcagtctcatgccc 480
           |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||
Sbjct: 618 gacacgccaattctgtaactattctcctcattcacttgcttggcagtcagtctcatgccc 677

                                                                       
Query: 481 ttgtcgggctcattatctggtggggcaatggagtaaaccttggaggcactccacacatat 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 678 ttgtcgggctcattatctggtggggcaatggagtaaaccttggagccactccacacatat 737

                                                                       
Query: 541 tctgaacatttaaccaatggagacatccctgaataccaagctgattgctgctccatttgg 600
           |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 738 tctgaacatttaaccaatggagacatccctaaacaccaagctgattgctactccatttgg 797

                                            
Query: 601 ccacctccacccaaaagggcttctcccgagagg 633
           |||||||||||||||||||||||||||||||||
Sbjct: 798 ccacctccacccaaaagggcttctcccgagagg 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1030
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1020
Effective search space:   635460
Effective search space used:   635460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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