BAC Information

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BAC

Clone NameMSMg01-543E08
Chromosome15 (Build37)
Map Location 96,309,372 - 96,484,295
singlet/doubletdoublet
Overlap geneSlc38a1
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
Downstream geneSlc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543E08.T7 (MSMg01no543_e08.b1)MSMg01-543E08.TJ (MSMg01no543_e08.g1)
ACCAG608846AG608847
length760735
length of high quality
(start - end)
355 (83 - 437)373 (165 - 537)
definitionCHROMAT_FILE: MSMg01no543_e08.b1 PHD_FILE: MSMg01no543_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005CHROMAT_FILE: MSMg01no543_e08.g1 PHD_FILE: MSMg01no543_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(96,309,372 - 96,309,726)(96,483,923 - 96,484,295)
sequence
CCTTTTTCTTTCTCTTTTGGCGGCGCCTATCGACTCACTATTCGGAGAGG
ATCCGCGGAATTCAGGACTTCTGGAAAAAAAAAGCAGCCAGTGCTCTCAA
CCATGAGCCATCATCTCTGCAGCCCTGATATGTATGCTTCGTATACACAG
AAACTAAACCGCCGTGTGTGGGGATAGGGTAAGGGAGCTGGCCTGAGGTT
AAACTGAAGAACCTGTTTTCCAAGTGTCTCCAGCAGAGATGATGGCTTCT
GTTCATGTGATGCCCTGGAGCAAAGGCTGAGGGCAGAGGGCAAAGGACCA
TTAGAGAGGTACAAGACCACTGGGGTTGTCCCTGAGAAACCCCCAAAACT
GCTCCTCAGGAGAAAGCTGACTAGGAGTATCAGATCCTGTGGAGCTGTGC
AGCTTCCTCAAGCCCTGGCCCTGGGGAGAGAAAGTAAATGAAGAAGGCAG
ATGAAGGGAGGGAAGGGACGAAGGATGGAGGGACGAAGGAGCTTAGTAAA
AGAGACTTTGGGATCTTTATTGTTTCCCAGGACTGGACCTCTAAACTCCA
GGACTAAACAAACTAACAATCAGTTTAACAACCCTATTAATTAGACTATG
TTTGACTTCCCTGTTCCTTTGCGCGGTGTGTAACAATTTGTTTTATATTG
ATCGATAATTTTCTACCTGCACGAAGTATATTCCCTAATGGTTTAGCAAT
GCTCCCCACTTTCTATCCTCCTTGTTGAGTTTCTCTTCTGTCAACGGTTT
TATCCTCCCC
TTTTNTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTGTAGGAATGTTG
AGGAATTCTTAGCTGGAGTCTGATTACGTACCCCAGGCCGGCCTCAAATT
CTTGTTCTTCCAGCTACCTCACAAGTGCTGGGCAAGGAATTTTCAATTGT
ATGTATAGGCAAATGAGCATCACTTGATATTACTCTCAAACACAAAGCTG
GATGCTATTCTTAAAGTCAAAGAGTAATTGTAAGCCCTGTACCCAGTGAG
TGTATATTAACAGTCGGTATGTATGGATTGTAAGGGTTGAAGAGTTCGGT
TTTCTTCATGCATTTTAATGTACTTCCACATTTTCTACAGTGAGGAAGCT
TTGTAACTGCATGCACGCTTAAACAATAAAATGGGGAAAAAGGGATTAGA
AGCGATTCCTGAATCGCTCATTATTCTTTGAGACTTGGTTCTTCAGCATA
AGGAAGGAGAGCTGGAGGGATGTAAAGAAATCAAGGCGATTTCCTTCTCC
TTCCTCCTTTTCTTTTCTCCCTCCCTCCATCCTTCCTGTCTTTAATGATA
AAAGACTCGAGTACTTCACTACCAGAGGAGAAGATGATGCACATATGGAA
GTAAAATGGGGGGAAAACCCCCACACACGCTGGAGAGATGGCTCATTGGT
TACCACTGGTTGCTGCTCCCTATTAATAAGGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_e08.b1 MSMg01no543_e08.b1 CHROMAT_FILE:
MSMg01no543_e08.b1 PHD_FILE: MSMg01no543_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:35 2005
         (355 letters)



>mm_chr15_96309172_96309926
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagccagtgctctcaaccatgagccatcatctctgcagccctgatatgtatgcttcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagccagtgctctcaaccatgagccatcatctctgcagccctgatatgtatgcttcgt 260

                                                                       
Query: 61  atacacagaaactaaaccgccgtgtgtggggatagggtaagggagctggcctgaggttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacagaaactaaaccgccgtgtgtggggatagggtaagggagctggcctgaggttaa 320

                                                                       
Query: 121 actgaagaacctgttttccaagtgtctccagcagagatgatggcttctgttcatgtgatg 180
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 321 actgaagaacctgttttccaagagtcgccagcagagatgatggcttctgttcatgtgatg 380

                                                                       
Query: 181 ccctggagcaaaggctgagggcagagggcaaaggaccattagagaggtacaagaccactg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ccctggagcaaaggctgagggcagagggcaaaggaccattagagaggtacgagaccactg 440

                                                                       
Query: 241 gggttgtccctgagaaacccccaaaactgctcctcaggagaaagctgactaggagtatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttgtccctgagaaacccccaaaactgctcctcaggagaaagctgactaggagtatca 500

                                                                  
Query: 301 gatcctgtggagctgtgcagcttcctcaagccctggccctggggagagaaagtaa 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcctgtggagctgtgcagcttcctcaagccctggccctggggagagaaagtaa 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_e08.g1 MSMg01no543_e08.g1 CHROMAT_FILE:
MSMg01no543_e08.g1 PHD_FILE: MSMg01no543_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:35 2005
         (373 letters)



>mm_chr15_96483723_96484495
          Length = 773

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacctcacaagtgctgggcaaggaattttcaattgtatgtataggcaaatgagcatcact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 573 tacctcacaagtgctgggcaaggaattttcaattgtatgtataggcaaatgagcatcatt 514

                                                                       
Query: 61  tgatattactctcaaacacaaagctggatgctattcttaaagtcaaagagtaattgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgatattactctcaaacacaaagctggatgctattcttaaagtcaaagagtaattgtaag 454

                                                                       
Query: 121 ccctgtacccagtgagtgtatattaacagtcggtatgtatggattgtaagggttgaagag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccctgtacccagtgagtatatattaacagtcggtatgtatggattgtaagggttgaagag 394

                                                                       
Query: 181 ttcggttttcttcatgcattttaatgtacttccacattttctacagtgaggaagctttgt 240
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 393 ttcggttttcttcatgcattttaatgcacttccacattttctacagtgaggaagttttgt 334

                                                                       
Query: 241 aactgcatgcacgcttaaacaataaaatggggaaaaagggattagaagcgattcctgaat 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 333 aactgcatgcacgcttaaacaataaaatgggaaaaaagggattagaagcgattcctgaat 274

                                                                       
Query: 301 cgctcattattctttgagacttggttcttcagcataaggaaggagagctggagggatgta 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 273 cgctcattattctttgagacttggttcttcagcagaaggaaggagagctggagggatgta 214

                        
Query: 361 aagaaatcaaggc 373
           |||||||||||||
Sbjct: 213 aagaaatcaaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)