BAC Information

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BAC

Clone NameMSMg01-544I20
Chromosome15 (Build37)
Map Location 44,239,791 - 44,240,152
singlet/doubletsinglet
Overlap geneNudcd1
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041
Downstream geneEny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544I20.T7 (MSMg01no544_i20.b1)MSMg01-544I20.TJ (MSMg01no544_i20.g1)
ACCAG609824AG609825
length755743
length of high quality
(start - end)
501 (50 - 550)558 (79 - 636)
definitionCHROMAT_FILE: MSMg01no544_i20.b1 PHD_FILE: MSMg01no544_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:15 2005CHROMAT_FILE: MSMg01no544_i20.g1 PHD_FILE: MSMg01no544_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGTTGAATGTTCATGCATTATACCATTTTGTCTTTTTTGA
TAATATCTCATTAATTTTACTTATTTACTTACTATTTATTTACCATCGTC
TGCAAAACTCAGTAAATTTAGCAGGTATCTGGGATTCTCTGGAGTGGATG
TTCTATTTCCTTGCCAGCACTTTCTAGAAAAAAACTGATCCCACTGTTTG
AACAAGTTGGACTTTATCTCTTGCAGCAAGAGAACATAAATGAAGGAGTG
CCGCAGGGTATCTGAGAGGATTTAGCATTGGTGATATCCAGGCATCTGAC
CTGTGTTAGGTGATTGGGAGGGTTAGGTTTAAGGAAGTGGGTGTGGTGAG
TCTCATCTAGAAATGAAGACTAGAATGGGACTCGGGCTATGACGAGTCAG
GACGATACAGTGGCTCATGCTAGTGTGCTGTGTGATCAAGTGTGTAGTGT
TGACGTGCTCTCCTGTATAGGAGTTCTTACTGAGTGATGTTCTTTTGTGC
CACATTGTATTTGTCTGATATTTATATTCAATACAAGAATCCTGTAAGTA
TTTGAACTTTTGTAGCCAAACTAAGACCTGCCTTGAGGCTTCATAGGCCA
GCTTCTGGGGGGAACAGGGGCTTGTTGTTACATTCCTATCCCAGTTTTTA
CTGGGTTTAAGTTTATCTTACTCTTTTATACTTTCAGGCTTTCATATTTG
ATGAA
GGCGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATAGGAACAATTATGG
GTCAGAGTTGTGACTGTGTGATGGCAGCCCATCCCTTACTTGATGTCCTG
TCTTCCTGCTGGAGATAGGCTCTATAAGTTCCCTCTCCTTACTGTCATCT
CATCTAAGGTCCCTCCCTTTGATTCCTGAGAGTCTCTCACCTCCCAGGTC
TCTGGTGCATTCTGGGGGATCCCCCAAACTCCTATTTCCTGAGGTTACCT
GTTTATATTCCTTCTGCTGGCCTTCAGGGCTTCAGTCCTTCTCACTCTCC
CAGTAACAGATCTGGTTACCCTTTCTTCCCTCCCCTCCTTCTTCCAATTT
CCCTCCCAGGTCCCTCCCTCCCTCCCCACTTGTGATTGCTTCCTTCTCTC
TCCCAAGTAGGACTGAGGCCTACTTGAGCACTTTAGCTTGTTGAGCTTTT
TGAGATCTGTGGACAATCCATACTTTTTGGGTAATCCATACTTTTTTTTA
AGCTAATATCCACTTATTAGTGAGTACATACTATGCATGTCCTTGTGGGT
CTGAGTTACCTCACTCAGGGTAATATTTTCTAGTTCCATCCATTTGATTG
TGNATTTTATGAAGTCATTGTTTTTTATAGCTGAGTAGTATTCCATTGTG
CAAATTAACCACATTTTCTGTATGCATTCTTCTATCGTAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_i20.b1 MSMg01no544_i20.b1 CHROMAT_FILE:
MSMg01no544_i20.b1 PHD_FILE: MSMg01no544_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:15 2005
         (501 letters)



>mm_chr15_44239791_44240691
          Length = 901

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%), Gaps = 1/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgttgaatgttcatgcattataccattttgtcttttttgataatatctcatta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattcatgttgaatgttaatgcattataccattttgtcttttttgataatatctcatta 303

                                                                       
Query: 65  attttacttatttacttactatttatttaccatcgtctgcaaaactcagtaaatttagca 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 302 attttacttatttacttactatttatttactatcgtctgcaaaactcagtaaattgagca 243

                                                                       
Query: 125 ggtatctgggattctctggagtggatgttctatttccttgccagcactttctagaaaaaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 242 ggtatctgggattctctggagtggatgttctatttccttgccagcactttctag-aaaaa 184

                                                                       
Query: 185 actgatcccactgtttgaacaagttggactttatctcttgcagcaagagaacataaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 actgatcccactgtttgaacaagttggactttatctcttgcagcaagagaacataaatga 124

                                                                       
Query: 245 aggagtgccgcagggtatctgagaggatttagcattggtgatatccaggcatctgacctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aggagtgccgcagggtatctgagaggatttagcattggtgatatccaggcatctgacctg 64

                                                                       
Query: 305 tgttaggtgattgggagggttaggtttaaggaagtgggtgtggtgagtctcatctagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tgttaggtgattgggagggttaggtttaaggaagtgggtgtggtgagtctcatctagaaa 4

              
Query: 365 tga 367
           |||
Sbjct: 3   tga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)