BAC Information

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BAC

Clone NameMSMg01-545I17
Chromosome15 (Build37)
Map Location 47,793,169 - 47,793,787
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I17.T7 (MSMg01no545_i17.b1)MSMg01-545I17.TJ (MSMg01no545_i17.g1)
ACCAG610581AG610582
length735740
length of high quality
(start - end)
613 (59 - 671)437 (63 - 499)
definitionCHROMAT_FILE: MSMg01no545_i17.b1 PHD_FILE: MSMg01no545_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:32 2005CHROMAT_FILE: MSMg01no545_i17.g1 PHD_FILE: MSMg01no545_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGA
CACTTGTACACATCACACACACACACACACACACATACACACACACACAC
AAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGAG
AGAGAGAGAGAGAGAGAGAGAAGACATACAGCGAGAAAATTAATAAGTTA
ACCTTTGTAATGGTATTTTCAGAAAGACAGAGTTGAAATGGTGCATACAG
TTGTGAGATCAATCATAGAAACACAATGTAGGTTTCTAAAACATCAAGAG
GAAACTGAAAATGTAGTAATGATGATTACCAATGACAGATTGCACATAAC
CTAAGAATGACTATAACTTCCTGCATGATTTTACAGTGTTTTGCTTCATT
ACAGGAAGTGTGTGCTTCATTACAGTAAGATTGATTGTTACGACAACTCC
ATAAGAGGTCTGGGTCATAATTTTGTAGACATGTATAAAAAACAAACACA
TTGAGGTATTTATATTTTCAATAAGTATTTAGGTCCAAGTCTTTATGTTT
AAAAACACTTAGGGAGCTCTCTGCTCAGTCCTTTCTTCTAGGGCAGATTC
CTAGCTGTCCTGCTCTAGTGAAGACACCATATCCTGACCTTTCGTAGGGG
ATCTGCTGCACTCATAATAGTTGGTAAGAAGCCACCACCTTCCAGAGTTC
CAGAGCTGCCTTTGGGAGCCCAGTAAGCTTGGAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATTACAACCCCATGGGACAAGGAATAGTTGAACGTGCT
CATCGCACCTTAAAGAATTGGCTTTTTAAAACAAAAGAGGGGCAGCTATA
TCCCCCAAGGTCACCAAAGGCCCACCTTGCCTTCACCTTATTTGTCCTAA
ATTTCTTGCACACCGATATCAAAGGCCAGTCTGCAGTGGATCGTCACTGG
CATCCAGTTACTTCTAATTCTTATGCATTGGTAAAATGGAAGGACCCCCT
GACTAATGAATGGAAGGGTCCAGATCCAGTTCTAATTTGGGGCAGAGGCT
CAGTTTGTGTTTTTTCACGAGATGAAGATGGAGCGCGGTGGCTGCCAGAG
AGATTAATTCGTCAGATGAACACAGATTCTGACTCTTCTGCAGGTAAATC
AACATTCTCGAGCCGGACCAGCGGATGTGCATCCCCGCCCCCCTAAGAGC
ACGCAGGTGGCAGCTGTTATCTCCATTCTCAGGACATTTCCAGCATGTGG
CTTTCAGTCTGAGTTAAAAATTAAGGTTACCAAGAGGGCTAAAAAAGTAG
ATATTTCTATATTAATAAAGATTGGTTTTTATTTTGATAGACAGGCTTAA
TCCCTTAGCTGACCTCTGGGCTTTCACCCTTGCTGTTACTGAAAGGTGTC
CTTAGCTCCTTAGGCTGTGGAAAAACAGGTATGAGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i17.b1 MSMg01no545_i17.b1 CHROMAT_FILE:
MSMg01no545_i17.b1 PHD_FILE: MSMg01no545_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:32 2005
         (613 letters)



>mm_chr15_47792954_47793966
          Length = 1013

 Score = 1139 bits (589), Expect = 0.0
 Identities = 608/619 (98%), Gaps = 10/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatcacacacacacacacacacacatacacacacacacacaa----acacagagagag 56
           ||||||||||||||| ||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 834 cacatcacacacacatacacacacacatacacacacacacacaaacacacacagagagag 775

                                                                       
Query: 57  agagagagagagagagagag----agagagacagac--agagagagagagagagagagag 110
           ||||||||||||||||||||    ||||||||||||  ||||||||||||||||||||||
Sbjct: 774 agagagagagagagagagagagaaagagagacagacagagagagagagagagagagagag 715

                                                                       
Query: 111 agaagacatacagcgagaaaattaataagttaacctttgtaatggtattttcagaaagac 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agaagacatacagcgagaaaattaataagttaacctttgtaatggtattttcagaaagac 655

                                                                       
Query: 171 agagttgaaatggtgcatacagttgtgagatcaatcatagaaacacaatgtaggtttcta 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agagttgaaatggtgcatacagttgtgagatcaatcatagaaacacaatgtaggtttcta 595

                                                                       
Query: 231 aaacatcaagaggaaactgaaaatgtagtaatgatgattaccaatgacagattgcacata 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaacatcaagaggaaactgaaaatgtagtaatgatgattaccaatgacagattgcacata 535

                                                                       
Query: 291 acctaagaatgactataacttcctgcatgattttacagtgttttgcttcattacaggaag 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acctaagaatgactataacttcctgcatgattttacagtgttttgcttcattacaggaag 475

                                                                       
Query: 351 tgtgtgcttcattacagtaagattgattgttacgacaactccataagaggtctgggtcat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtgtgcttcattacagtaagattgattgttacgacaactccataagaggtctgggtcat 415

                                                                       
Query: 411 aattttgtagacatgtataaaaaacaaacacattgaggtatttatattttcaataagtat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aattttgtagacatgtataaaaaacaaacacattgaggtatttatattttcaataagtat 355

                                                                       
Query: 471 ttaggtccaagtctttatgtttaaaaacacttagggagctctctgctcagtcctttcttc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaggtccaagtctttatgtttaaaaacacttagggagctctctgctcagtcctttcttc 295

                                                                       
Query: 531 tagggcagattcctagctgtcctgctctagtgaagacaccatatcctgacctttcgtagg 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tagggcagattcctagctgtcctgctctagtgaagacaccatatcctgacctttcgtagg 235

                              
Query: 591 ggatctgctgcactcataa 609
           |||||||||||||||||||
Sbjct: 234 ggatctgctgcactcataa 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)