BAC Information

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BAC

Clone NameMSMg01-545M19
Chromosome15 (Build37)
Map Location 22,982,459 - 22,983,026
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545M19.T7 (MSMg01no545_m19.b1)MSMg01-545M19.TJ (MSMg01no545_m19.g1)
ACCAG610775AG610776
length740744
length of high quality
(start - end)
692 (35 - 726)565 (64 - 628)
definitionCHROMAT_FILE: MSMg01no545_m19.b1 PHD_FILE: MSMg01no545_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:52 2005CHROMAT_FILE: MSMg01no545_m19.g1 PHD_FILE: MSMg01no545_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATCT
GAGGAATACCGAATGTCAGAGAAGTACCTGAAAAAAATGTTCAATCCTTA
ATCATAAGGGAAATGCAAATCAAAACAACCCAGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATGACAGCAGATGCTGGCAAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAA
CCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACT
ACTGGAGGATCCCACAACACCTCTCCTGGGCATATATCCAGAAGATGTTC
CAACCGGTAAGAAGGACACATGCCCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGAAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAAAAAAAATGTGTTACATTTACACAATGGAGTACTATTCAGCTAT
TAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGAACCTGGATG
GCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATG
TACTCATTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATA
TAATATACAATTTTCTAAACGCATGAAACTCAAGAAGAACAAAGACCAAA
GTGTTGACACTTTGCCCCTTCTTAGAATTGGGAACAAAGC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATGAAAAGTGAGATGCTGAGAAAATAGTACTGTATGA
AACATTAAAATAATACTTGTTGACAAAAGAGAGATTAATATCTTACAAGG
TTTTTCCGTTCCATTGTGGTGATTCAATATACTGACAACAATTGAGATGA
ATAATTATGTTTGTAGTTATACATTTGATACATAGACCACTCAGATTTAA
ATGTATCTATCTATCCAATTTTATACTTACATATTATAGTTGATCATTTA
TTGTGTGCTTGAAGAAACAGTCAGCCGTGTAAATTCCCAGTGTTTTTTTG
AAATGAAAGCCATGAGTTTGAAAGAGAGCAAGGAGGTGTGTTTGGGGGAG
TTTGTAGGGATGAGATAGAAGGTAGAAATGTGATAATCCCCCCAAAAGGA
GAATTAAATAAATTTAAGAAATCAGTATAAAACTGTTGGAGGATGGACCT
GGACAGGGATAACAACTGGATTGTAAAAAGAAAATTAAATAATAATAATA
ATGATAATAATAATAACAAGAGAAATTTAAAGAAAAAAAGAGAACCCCTT
GTTATAGGAGGTTTTGCTTCTGGGATGACTGTTCTTCAGATCTTCAAGGA
GTTCATCTCATTCCAATTTTCATCTTTTCTTCCCACCACAGCAACTATTC
CCAACAACCTGTCCTAAGCTATGANGAAAGTACTGTGAGGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_m19.g1 MSMg01no545_m19.g1 CHROMAT_FILE:
MSMg01no545_m19.g1 PHD_FILE: MSMg01no545_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:52 2005
         (565 letters)



>mm_chr15_22982259_22983223
          Length = 965

 Score = 1052 bits (544), Expect = 0.0
 Identities = 561/568 (98%), Gaps = 3/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaagtgagatgctgagaaaatagtactgtatgaaacattaaaataatacttgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaaagtgagatgctgagaaaatagtactgtatgaaacattaaaataatacttgttga 260

                                                                       
Query: 61  caaaagagagattaatatcttacaaggtttttccgttccattgtggtgattcaatatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagagagattaatatcttacaaggtttttccgttccattgtggtgattcaatatact 320

                                                                       
Query: 121 gacaacaattgagatgaataattatgtttgtagttatacatttgatacatagaccactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaacaattgagatgaataattatgtttgtagttatacatttgatacatagaccactca 380

                                                                       
Query: 181 gatttaaatgtatctatctatccaattttatacttacatattatagttgatcatttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttaaatgtatctatctatccaattttatacttacatattatagttgatcatttattg 440

                                                                       
Query: 241 tgtgcttgaagaaacagtcagccgtgtaaattcccagtgtttttttgaaatgaaagccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcttgaagaaacagtcagccgtgtaaattcccagtgtttttttgaaatgaaagccat 500

                                                                       
Query: 301 gagtttgaaagagagcaaggaggtgtgtttgggggagtttgtagggatgagatagaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtttgaaagagagcaaggaggtgtgtttgggggagtttgtagggatgagatagaaggt 560

                                                                       
Query: 361 agaaatgtgataatccccccaaaaggagaattaaataaatttaagaaatcagtataaaac 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 agaaatgtgataatccccccaaaaggagaattaaataaatttaaaaaatcagtataaaac 620

                                                                       
Query: 421 tgttggaggatggacctggacagggataacaactggattgtaaaaagaaaattaaataat 480
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttggagaatggacctggacggggataacaactggattgtaaaaagaaaattaaataat 680

                                                                       
Query: 481 aataataat---gataataataataacaagagaaatttaaagaaaaaaagagaacccctt 537
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataataataatgataataataataacaagagaaatttaaagaaaaaaagagaacccctt 740

                                       
Query: 538 gttataggaggttttgcttctgggatga 565
           ||||||||| ||||||||||||||||||
Sbjct: 741 gttataggaagttttgcttctgggatga 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)