Query= MSMg01no546_d04.b1 MSMg01no546_d04.b1 CHROMAT_FILE:
MSMg01no546_d04.b1 PHD_FILE: MSMg01no546_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:25 2005
(668 letters)
>mm_chr15_71401859_71402927
Length = 1069
Score = 1089 bits (563), Expect = 0.0
Identities = 616/641 (96%), Gaps = 15/641 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcaactagccga-tgagagatggatactatatgtcactcccacctcagtccat 63
||||||||||||||| | | |||||||||| |||||||||||||| |||
Sbjct: 628 gaattcttcaactag-ctagtgagagatgggtactatatgtcact------------cat 582
Query: 64 ttgttagagctctaagaaagcaaaggagcaacataaatcattcctcctctcaaatgactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 581 ttgttagagctctaagaaagcaaaggagcaacataaatcattcctcctctcaaattactt 522
Query: 124 ccgagaaagcagaatatatggaatatgacattagaaaa-ttagtcatcagagaaagagta 182
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 521 ccgagaaagcagaatatatggaagatgacattagaaaatttagtcattagagaaagagta 462
Query: 183 tgtgttgggttcctagtaatgaaggactgatgaaaaaaacaagacaagctttgatactta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgtgttgggttcctagtaatgaaggactgatgaaaaaaacaagacaagctttgatactta 402
Query: 243 acacatcattctttattttccctaaagtaagatttaacatactcaaatagtttcaaattt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacatcattctttattttccctaaagtaagatttaacatactcaaatagtttcaaattt 342
Query: 303 taatattgaaactttcatttaactactaggttgttcactttctgtttctgtatgtaattg 362
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taatatcgaaagtttcacttaactactaggttgttcactttctgtttctgtatgtaattg 282
Query: 363 ctatttgtattaaatcaactttgtcttagtcactgtcttatttctgtgaagagacatcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctatttgtattaaatcaactttgtcttagtcactgtcttatttctgtgaagagacatcat 222
Query: 423 gaccaagacaacacttgtgaaagaaagcattgaattgggtgcttggttatagtttcagag 482
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 221 gaccaagacaacacttgtgaaagaaagcattgaattgtgtgcttggttatagtttcagag 162
Query: 483 gtttagtccataattataacagggagcatggccgtatgcatggctctggagcagtcgctg 542
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 161 gtttagtccataattataacagggagcatagccgtatgcatggctctggagcagtcgctg 102
Query: 543 agagctacatcctggtcctcagtctgagagacagacagaaaaccccggtgacacatttct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agagctacatcctggtcctcagtctgagagacagacagaaaaccccggtgacacatttct 42
Query: 603 gacaacaaggccatacctattccaacaagaacatacctcct 643
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gacaacaaggccatacctattccaacaagaacatacctcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space: 696822
Effective search space used: 696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_d04.g1 MSMg01no546_d04.g1 CHROMAT_FILE:
MSMg01no546_d04.g1 PHD_FILE: MSMg01no546_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:25 2005
(579 letters)
>mm_chr15_71272824_71273803
Length = 980
Score = 1083 bits (560), Expect = 0.0
Identities = 575/580 (99%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 1 ctcctgacatgagaagaaaatgttgcatgaatggaaaattcttaacaccttcttttgtca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctcctgacatgagaagaaaatgttgcatgaatggaaaattcttaataccttcttttgtca 260
Query: 61 ttcttgctcagattctccatctcatctttaatatgccctcttgcctttatacacacccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgctcagattctccatctcatctttaatatgccctcttgcctttatacacacccat 320
Query: 121 ccctgccccttaatgtctttggttattctcttccctttgatatagattacctcaaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgccccttaatgtctttggttattctcttccctttgatatagattacctcaaacaga 380
Query: 181 tgttcaccagccctacacttggttcagccttcatattaaggctcaaacatcaaatgtcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcaccagccctacacttggttcagccttcatattaaggctcaaacatcaaatgtcca 440
Query: 241 cagagaagaattcataagagcaggcacctttctggtgtaggcaaaagtcctagctctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaagaattcataagagcaggcacctttctggtgtaggcaaaagtcctagctctggg 500
Query: 301 tactaacaatagccctccagtatttgtagatccccaaaccttaattttcactttttttt- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaacaatagccctccagtatttgtagatccccaaaccttaattttcacttttttttt 560
Query: 360 ctaagccaagagctcccagacttactgatacatctcagcacagagacaactctcatacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagccaagagctcccagacttactgatacatctcagcacagagacaactctcatacag 620
Query: 420 atgtatttacttgaggtatgtcatcatgaaagcatgcaatgatatctggggatgtggatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtatttacttgaggtatgtcatcatgaaagcatgcaatgatatctggggatgtggatg 680
Query: 480 aatagtctcctctttatagtctcactttcaaagttatctgcttgcttttactgagacaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatagtctcctctttatagtctcactttcaaagttatctgcttgcttttactgagacaat 740
Query: 540 gaagatgaaaagtctacaacaccctgctcctggtcctagt 579
||||||||||| ||||||| ||||||||||||||| ||||
Sbjct: 741 gaagatgaaaattctacaaaaccctgctcctggtcatagt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
