BAC Information

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BAC

Clone NameMSMg01-546I13
Chromosome15 (Build37)
Map Location 67,775,342 - 67,955,744
singlet/doubletdoublet
Overlap geneZfat1
Upstream geneNdrg1, LOC100040667, St3gal1
Downstream geneLOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546I13.T7 (MSMg01no546_i13.b1)MSMg01-546I13.TJ (MSMg01no546_i13.g1)
ACCAG611336AG611337
length740750
length of high quality
(start - end)
652 (61 - 712)415 (200 - 614)
definitionCHROMAT_FILE: MSMg01no546_i13.b1 PHD_FILE: MSMg01no546_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:51 2005CHROMAT_FILE: MSMg01no546_i13.g1 PHD_FILE: MSMg01no546_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,955,093 - 67,955,744)(67,775,342 - 67,775,756)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCAGCGT
TTGTTTCTGCCTTGCTAGTGAATCTCCTCAGCGAGCTCACCGGAGCTGAC
CTTTTCTTGTCCAGCCTGTGAACACTGCCAAGGCCTTTTCTTATTGGGCT
TCTCAATGTACTTGACTCTACTGTCTCTCCCACTGTGAGGACAGCAGCCT
TGGACCCCCAACTCCAGAAGCCTCTCATTCTTTGGGTTGCGCTCCCTTTC
TGCTGCCCCCTTTCCTGCCCGTTATTCGGGGCCACTACTCTAATACATAG
CTGCCAATTCTCTTGCCACAGGCACTTTAATCACAGAGCATCTGCCAGGT
GCTCTATTCTAGATATGCGTCTATACCACAATTTCTTGTGTGTTTTATAT
TTATGGCTCTATCTCCTCTCTGGACCAGGAATCTAGACTTCCTAGTTTTA
CCCCTGTAAGACTGTCACCATCTCTTCTGTTATCTGAACTAGACATATTG
ATGATCCCCTTTCTCAAGCCTTTCCTCCTGCACATCATCTTAACCATTGG
GTCCATCTCACTTCCCGCCTCCTTCTCTCTGACTCGTGGCTTCCTTGCAG
GGTGTTTGTTCCTTGCTTTAGGCTGGCCCTCAGTGACTCTGGTCTATAGC
ATTGCAGCAAAGGACGATTGGNTCCTGCTCCACTCTAGTTTCTTTCAGTC
CATCCTCTATTTAGTTTCCAGAGCAATAATTTGAAATTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTAAAACATGCAAGATTCAGGAAAAGAGAGGTG
GTTTTTGTTCACTCCCGGGGTTTATTATAACAAACAAACAAACAAAAAAT
TTTCTCAAGAATTAGCCAAATGAGAAAAAAGCCGGGGACCTCTGTATCTT
ACTTACAGATTCTCACTACTCTGAACTTGTTATGGCCCCTCTTCCAGCTG
GCCTTCAGTATTGCTCATTAGCCTTGAGCCTCTCTTGCTGGTTCATTTTT
CACATTAGTCTCAGCGCTCTTGAACTGTGATGAACTCCAGGGTGAAGCCT
GAGGCCACCACATGTCATTGGATTGGAGTTCTGGGGTGGAGGTAATTATC
AAGTCCAGGACATTACCCCATAGGAAGGTTTCCATCCCTTTACAGTGGAC
AGGGATAGGACAGTATGAGAAGGGCTTATAAGGGAAGCCACCTAGGATAA
CAGGGGGAGAGTCTTGATACTCGACACCCAAGATTTGCCAGGCCTCAAGT
AGGTTCAACAAGGGCCCATCGGTGTGCAGTTTTTCTGTGTTAAACAATAT
TTTCCAAGGCTGCCCCAATTCTTTTTCTTACATGCATTTTAAGATGTTTT
TCTCCTGTGAAGAAAGAAAAGCACTTATAACAGTATTTTTAAAAGAGATT
AAGATAAACATCACCTGCTGTCATCGTGCTGGGAGGGAAGAGTGGGGAAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_i13.b1 MSMg01no546_i13.b1 CHROMAT_FILE:
MSMg01no546_i13.b1 PHD_FILE: MSMg01no546_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:51 2005
         (652 letters)



>mm_chr15_67954893_67955944
          Length = 1052

 Score = 1170 bits (605), Expect = 0.0
 Identities = 640/652 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgctagtgaatctcctcagcgagctcaccggagctgaccttttcttgtccagcctgtg 60
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 852 cttgctagtgaatctcctcagcgagctcaccagagctgaccttttcttttccagcctgtg 793

                                                                       
Query: 61  aacactgccaaggccttttcttattgggcttctcaatgtacttgactctactgtctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aacactgccaaggccttttcttattgggcttctcaatgtacttgactctactgtctctcc 733

                                                                       
Query: 121 cactgtgaggacagcagccttggacccccaactccagaagcctctcattctttgggttgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 732 cactgtgaggacagcagccttggacccccaactccagaagcctctcattcttcgggttgc 673

                                                                       
Query: 181 gctccctttctgctgccccctttcctgcccgttattcggggccactactctaatacatag 240
            ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct: 672 cctccctttctgctgccccctttcctgcccattattcggggccattactctaatacatgg 613

                                                                       
Query: 241 ctgccaattctcttgccacaggcactttaatcacagagcatctgccaggtgctctattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctgccaattctcttgccacaggcactttaatcacagagcatctgccaggtgctctattct 553

                                                                       
Query: 301 agatatgcgtctataccacaatttcttgtgtgttttatatttatggctctatctcctctc 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 552 agatatgcatctataccacaatttcttgtgtgttttatatttatggctctatctcttctc 493

                                                                       
Query: 361 tggaccaggaatctagacttcctagttttacccctgtaagactgtcaccatctcttctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tggaccaggaatctagacttcctagttttacccctgtaagactgtcaccatctcttctgt 433

                                                                       
Query: 421 tatctgaactagacatattgatgatcccctttctcaagcctttcctcctgcacatcatct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 432 tatctgaactagacatattgatgatcccctttctcaagcctttcctcctgtacatcatct 373

                                                                       
Query: 481 taaccattgggtccatctcacttcccgcctccttctctctgactcgtggcttccttgcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taaccattgggtccatctcacttcccgcctccttctctctgactcgtggcttccttgcag 313

                                                                       
Query: 541 ggtgtttgttccttgctttaggctggccctcagtgactctggtctatagcattgcagcaa 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 312 ggtgtttgttccttgctttaggctggccctcagtgactctggcctatagcattgcagcaa 253

                                                               
Query: 601 aggacgattggntcctgctccactctagtttctttcagtccatcctctattt 652
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggacgattggttcctgctccactctagtttctttcagtccatcctctattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no546_i13.g1 MSMg01no546_i13.g1 CHROMAT_FILE:
MSMg01no546_i13.g1 PHD_FILE: MSMg01no546_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:52 2005
         (415 letters)



>mm_chr15_67775142_67775956
          Length = 815

 Score =  748 bits (387), Expect = 0.0
 Identities = 408/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttacagattctcactactctgaacttgttatggcccctcttccagctggccttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttacagattctcactactctgaacttgttatggcccctcttccagctggccttcagt 260

                                                                       
Query: 61  attgctcattagccttgagcctctcttgctggttcatttttcacattagtctcagcgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 attgctcattagccttgagcctctcttgctggttcatttttcacattagtcccagcgctc 320

                                                                       
Query: 121 ttgaactgtgatgaactccagggtgaagcctgaggccaccacatgtcattggattggagt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaactgtgatgaactccagggtgaagcctgaggccaccacatgtcattggattggagt 380

                                                                       
Query: 181 tctggggtggaggtaattatcaagtccaggacattaccccataggaaggtttccatccct 240
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tctggggtggagggaattatcaagtccaggagattaccccataggaaggtttccatccct 440

                                                                       
Query: 241 ttacagtggacagggataggacagtatgagaagggcttataagggaagccacctaggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacagtggacagggataggacagtatgagaagggcttataagggaagccacctaggata 500

                                                                       
Query: 301 acagggggagagtcttgatactcgacacccaagatttgccaggcctcaagtaggttcaac 360
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 501 acagggggagagtcttgatactggacacccaagatttgccaggcatcaagtaggttcaac 560

                                                                  
Query: 361 aagggcccatcggtgtgcagtttttctgtgttaaacaatattttccaaggctgcc 415
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggcccatcagtgtgcagtttttctgtgttaaacaatattttccaaggctgcc 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)