Query= MSMg01no546_k20.b1 MSMg01no546_k20.b1 CHROMAT_FILE:
MSMg01no546_k20.b1 PHD_FILE: MSMg01no546_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:02 2005
(717 letters)
>mm_chr15_32615625_32616741
Length = 1117
Score = 652 bits (337), Expect = 0.0
Identities = 362/377 (96%), Gaps = 14/377 (3%)
Strand = Plus / Minus
Query: 5 gaattcacttggggctctgaagtgctgcaatcctgtaagccaggctgtttcctcctttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattcacttggggctctgaagtgctgcaatcctgtaagccaggctgtttcctcctttgt 310
Query: 65 gtttcatttaatttaaaatgttttccatttatatgaattctaatattgtcaattgtagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtttcatttaatttaaaatgttttccatttatatgaattctaatattgtcaattgtagtt 250
Query: 125 ttgtaaatacaactgttgtcagtattagaaggctatgaagg----aaatgtcttctctgt 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 ttgtaaatacaactgttgtcagtattagaaggctatgaaggaaataaatgtcttctctgt 190
Query: 181 ctctttgtctctgctgtctctctctctctctctctctctctctctctctctctctctgtg 240
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 189 ctctttgtctctg------ctctctctctctctctctctctctctctctctctctgtgtg 136
Query: 241 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--gcgtgtgtctccccctctctcct 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 135 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtctccccctctctc-- 78
Query: 299 ctctctctctgtttttcaacacaggggttccctgtgcatatctggctgtcctagttgttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ctctctctctgtttttcaacacaggggttccctgtgcatatctggctgtcctagttgttc 18
Query: 359 ctgtagaccagactgac 375
|||||||||||||||||
Sbjct: 17 ctgtagaccagactgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_k20.g1 MSMg01no546_k20.g1 CHROMAT_FILE:
MSMg01no546_k20.g1 PHD_FILE: MSMg01no546_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:02 2005
(665 letters)
>mm_chr15_32445415_32446477
Length = 1063
Score = 1249 bits (646), Expect = 0.0
Identities = 659/664 (99%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 1 cactcagaccttctcttctgtggcaccatcagcctgcatttccatcccacatagagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcagaccttctcttctgtggcaccatcagcctgcatttccatcccacatagagattc 260
Query: 61 cttgctgtcctaagatgccatcggggcagatacaaagaatcagtgtgtaaagctcaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgctgtcctaagatgccatcggggcagatacaaagaatcagtgtgtaaagctcaccca 320
Query: 121 gtatcgcactgaacacagatgcctttcgttcatggtttgggaaatgtgcactgagtggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatcgcactgaacacagatgcctttcgttcatggtttgggaaatgtgcactgagtggat 380
Query: 181 gttttgtggtggtaatagacgatgtgggagtggtttggaaggagaggaactgtggggcag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttatggtggtaatagacgatgtgggagtggtttggaaggagaggaactgtggggcag 440
Query: 241 ggaatgctaaaacttagtaattcctctttggtcttcctccacaaaaatctgcccttctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatgctaaaacttagtaattcctctttggtcttcctccacaaaaatctgcccttctcc 500
Query: 301 tcccagcatttctcagatgccagacttcaacagaaaacagcactccagatgagggtttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccagcatttctcagatgccagacttcaacagaaaacagcactccagatgagggtttca 560
Query: 361 cattctcaccaggcaaatctcacttggtagagccttgtgtggatcctagaaatacagagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctcaccaggcaaatctcacttggtagagccttgtgtggatcctagaaatacagagg 620
Query: 421 aggtaggcagagtcttgggatgacctgaaaagaacctgagccagtagctcacttggattt 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aggtaggcagagtcttgggatgacctgaaaagaacctgagcctgtagctcacttggattt 680
Query: 481 gaccctctactcattcttctggcagtggtcacctgcctaagatcacagggatcatgaata 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 gaccctctactcattcttctggcagtggtcacctgcctaagatcatagggatcatgaata 740
Query: 541 ttgacacacaatccaaagacaggtgtcaatatagccaaatatccaaaagtatccaaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgacacacaatccaaagacaggtgtcaatatagccaaatatccaaaagtatccaaatat 800
Query: 601 cctaaatatacaaaaaaaataatacccaaaagtagacaacactttatgagtcacattgac 660
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctaaatatacaaaaaaaa--atacccaaaagtagacaacactttatgagtcacattgac 858
Query: 661 tgga 664
||||
Sbjct: 859 tgga 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space: 689715
Effective search space used: 689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
