Query= MSMg01no546_l20.b1 MSMg01no546_l20.b1 CHROMAT_FILE:
MSMg01no546_l20.b1 PHD_FILE: MSMg01no546_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:08 2005
(711 letters)
>mm_chr15_96123362_96124472
Length = 1111
Score = 1313 bits (679), Expect = 0.0
Identities = 697/705 (98%), Gaps = 5/705 (0%)
Strand = Plus / Plus
Query: 7 gaattccaggacagcaggggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggacagcaggggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 266
Query: 67 aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 326
Query: 127 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 386
Query: 187 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 446
Query: 247 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 506
Query: 307 tgtttgttttggttttggttttttattgttttttgcattcacttttgggttattcacagt 366
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtttgttttggttttgtttttttattgttttttgcattcacttttgggttattcacagt 566
Query: 367 agtgactttgcagtcacattgtgaattgtgtgggtttttttgtttgtttttgtttttttc 426
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 567 agtgactttgcagtcacattgtgaattgtgtgggtttttttgtttgtttt-gtctttttc 625
Query: 427 ttgttaggtaaagaaagccctttcatgagtggtctgtgttactagcagttaacttttatc 486
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgttaggtaaag----ccctttcatgagtggtctgtgttactagcagttaacttttatc 681
Query: 487 agttaaatgacatgaatgcgtttagagattgtcagctagtggctgccatctaggtcagtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agttaaatgacatgaatgcgtttagagattgtcagctagtggctgccatctaggtcagtg 741
Query: 547 aagaggccttttactagagacttgaggtaaggtgaggaattcagcactgttcagtaggta 606
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aggaggccttttactagagacttgaggtaaggtgaggaattcagcactgttcagtaggta 801
Query: 607 actaaagtcacagaccggatctgtaaattgctaaacagctaaaacagcagattactccta 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actaaagtcacagaccggatctgtaaattgctaaacagctaaaacagcagattactccta 861
Query: 667 gtcgagaaaggaaaataaaataatgataggggcagggggggaaag 711
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtcgagaaaggaaaataaaataatgataggggcagggggggaaag 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_l20.g1 MSMg01no546_l20.g1 CHROMAT_FILE:
MSMg01no546_l20.g1 PHD_FILE: MSMg01no546_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:08 2005
(631 letters)
>mm_chr15_96322191_96323219
Length = 1029
Score = 963 bits (498), Expect = 0.0
Identities = 549/578 (94%), Gaps = 24/578 (4%)
Strand = Plus / Minus
Query: 58 cctggctccact-cttgacacagtgaattgcagaaagtgaaaatccaagcctttgattga 116
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cctggctcca-tgcttgacacggtgaattgcagaaagtgaaaatccaagcctttgattga 971
Query: 117 gaattaaatagaaaaccactattgaa-ttaaaaaaaaaaaaagctaaaaataactaggta 175
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 970 gaattaaatagaaaaccactattgaatttaaaaaaaaaaaaagctaaaaataactaggta 911
Query: 176 attgctatggtttgaatatgaagttccccagaggatcatgtgttgactattggcctctgg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 attgctatggtttgaatatgaagttccccagaggatcatgtgttgactattggcctctgg 851
Query: 236 ttactagtgcaacttagtgtagtggaggcgggcctggtggaggcgggcctggtggaggcg 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttactagtgcaactcagtgtagtggaggcgggcctggtggaggcgggcctggtggaggcg 791
Query: 296 ggcctggtggaggcgggcctggtggaggtgggcctggtggaggtgagctttccgtggtat 355
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 790 ggcctggtggaggc---------------gggcctggtggaggtgagctttccgtggtat 746
Query: 356 attcccct--ccaggattcccctccagctgctacagaatgggactctttgctctactgag 413
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 att----ttgccaggattcccctccagctgctacagaatgggactctttgctctactgag 690
Query: 414 atgtttctgctttgccacaggctgaaaaagccacaaaaccagtcaactgtgagctgaaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atgtttctgctttgccacaggctgaaaaagccacaaaaccagtcaactgtgagctgaaaa 630
Query: 474 gtctacaaccaagagctttaatggctttcatctgtaaattaatttgctcacatgtgttgt 533
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 629 gtctacaaccaagagctttaatggctttcgtctgtaaactaatttgctcacatgtgttgt 570
Query: 534 cacggtgacgaaaaagaaaactatttttcagtgtcagtggaattggaggccaagtcttgt 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catggtgacgaaaaagaaaactatttttcagtgtcagtggaattggaggccaagtcttgt 510
Query: 594 gtggcacacactggttctgaatacatatgcggcttagc 631
||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtggcacacactggttctgaatacatatgcggcttagc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1029
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1019
Effective search space: 632799
Effective search space used: 632799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
