Query= MSMg01no546_m20.b1 MSMg01no546_m20.b1 CHROMAT_FILE:
MSMg01no546_m20.b1 PHD_FILE: MSMg01no546_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:13 2005
(709 letters)
>mm_chr15_96123364_96124472
Length = 1109
Score = 1313 bits (679), Expect = 0.0
Identities = 697/705 (98%), Gaps = 5/705 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggacagcaggggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagcaggggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 264
Query: 65 aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 324
Query: 125 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 384
Query: 185 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 444
Query: 245 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 504
Query: 305 tgtttgttttggttttggttttttattgttttttgcattcacttttgggttattcacagt 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtttgttttggttttgtttttttattgttttttgcattcacttttgggttattcacagt 564
Query: 365 agtgactttgcagtcacattgtgaattgtgtgggtttttttgtttgtttttgtttttttc 424
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 565 agtgactttgcagtcacattgtgaattgtgtgggtttttttgtttgtttt-gtctttttc 623
Query: 425 ttgttaggtaaagaaagccctttcatgagtggtctgtgttactagcagttaacttttatc 484
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgttaggtaaag----ccctttcatgagtggtctgtgttactagcagttaacttttatc 679
Query: 485 agttaaatgacatgaatgcgtttagagattgtcagctagtggctgccatctaggtcagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agttaaatgacatgaatgcgtttagagattgtcagctagtggctgccatctaggtcagtg 739
Query: 545 aagaggccttttactagagacttgaggtaaggtgaggaattcagcactgttcagtaggta 604
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aggaggccttttactagagacttgaggtaaggtgaggaattcagcactgttcagtaggta 799
Query: 605 actaaagtcacagaccggatctgtaaattgctaaacagctaaaacagcagattactccta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 actaaagtcacagaccggatctgtaaattgctaaacagctaaaacagcagattactccta 859
Query: 665 gtcgagaaaggaaaataaaataatgataggggcagggggggaaag 709
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtcgagaaaggaaaataaaataatgataggggcagggggggaaag 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_m20.g1 MSMg01no546_m20.g1 CHROMAT_FILE:
MSMg01no546_m20.g1 PHD_FILE: MSMg01no546_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:13 2005
(630 letters)
>mm_chr15_96322192_96323219
Length = 1028
Score = 961 bits (497), Expect = 0.0
Identities = 548/577 (94%), Gaps = 24/577 (4%)
Strand = Plus / Minus
Query: 58 cctggctccact-cttgacacagtgaattgcagaaagtgaaaatccaagcctttgattga 116
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 cctggctcca-tgcttgacacggtgaattgcagaaagtgaaaatccaagcctttgattga 970
Query: 117 gaattaaatagaaaaccactattgaa-ttaaaaaaaaaaaaagctaaaaataactaggta 175
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 969 gaattaaatagaaaaccactattgaatttaaaaaaaaaaaaagctaaaaataactaggta 910
Query: 176 attgctatggtttgaatatgaagttccccagaggatcatgtgttgactattggcctctgg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 attgctatggtttgaatatgaagttccccagaggatcatgtgttgactattggcctctgg 850
Query: 236 ttactagtgcaacttagtgtagtggaggcgggcctggtggaggcgggcctggtggaggcg 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttactagtgcaactcagtgtagtggaggcgggcctggtggaggcgggcctggtggaggcg 790
Query: 296 ggcctggtggaggcgggcctggtggaggtgggcctggtggaggtgagctttccgtggtat 355
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 789 ggcctggtggaggc---------------gggcctggtggaggtgagctttccgtggtat 745
Query: 356 attcccct--ccaggattcccctccagctgctacagaatgggactctttgctctactgag 413
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 att----ttgccaggattcccctccagctgctacagaatgggactctttgctctactgag 689
Query: 414 atgtttctgctttgccacaggctgaaaaagccacaaaaccagtcaactgtgagctgaaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtttctgctttgccacaggctgaaaaagccacaaaaccagtcaactgtgagctgaaaa 629
Query: 474 gtctacaaccaagagctttaatggctttcatctgtaaattaatttgctcacatgtgttgt 533
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 628 gtctacaaccaagagctttaatggctttcgtctgtaaactaatttgctcacatgtgttgt 569
Query: 534 cacggtgacgaaaaagaaaactatttttcagtgtcagtggaattggaggccaagtcttgt 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 catggtgacgaaaaagaaaactatttttcagtgtcagtggaattggaggccaagtcttgt 509
Query: 594 gtggcacacactggttctgaatacatatgcggcttag 630
|||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtggcacacactggttctgaatacatatgcggcttag 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space: 631160
Effective search space used: 631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
