BAC Information

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BAC

Clone NameB6Ng01-002K23
Chromosome16 (Build37)
Map Location 30,523,068 - 30,656,987
singlet/doubletdoublet
Overlap geneTmem44, Lsg1, BC022623
Upstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
Downstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K23.bB6Ng01-002K23.g
ACCDH840636DH840637
length2251,108
definitionDH840636|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K23, 5' end.DH840637|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,523,068 - 30,523,292)(30,655,880 - 30,656,987)
sequence
tctgtctctagactctagtcatactgatacacaaatagcttagagcaaag
ggagggaagcggcacaccagggactcgatcacgaaatttgcaagcagtgt
tgccgatcaagcgctcctggtcaaggtcaacttacagcttctggggtttg
agtcacaggaacagaaatgttctagagcggatgtgtgggtacatagtggt
gtgtgtgtgtgtgtgtgtgtgtgtg
gaattccataactgcctcaaggatgggtcggtgccgcgccccccccccct
cccgccgccaaggttcccagtgtagtagctaaggccagcccagcctgcag
tcaggtactaccattgcaacttgactggagactgtcgagatgaaaactgg
atgcctgcctgtgtcccttgcaacatcttctttacccacacgggtggaca
gtcacactgctgagagagaagtgctgtgggctcccgatgaaagccgcagc
ctctctgaattgaaaataaaatcgccagaaatccatgaggcacgcccaaa
agccagttccactaaaacagaacaacagtttgtgtctgtgtgctttccca
tcagacacggccactgggcccagcagcagcgtatctccaaaccatggcaa
ggaaaccagggtgcacacacacacccacatagacacacacacacaaacac
acaaacatacacacacacaaacacccacacacacaaacacacaaacacac
acacacacacaggcacacacacacaaacacccccccacacacacacacaa
acacccccccacacacacacacacacaaacacccgcacacacaaacaccc
ccacacacaaacacacaaacatacacacacaaacacccacccacacacac
accttttttttttttaagatgagttcacaggctgacctcaaacctagtct
tcctggctccactcccagcatccctcaacctcaaatgctgacattactgg
caagtgctaccagctctaggcccttccttctcatttcttttccattcctt
tcaaattgctgtgtgtatgtatgctgcccctcccccaaccctgtctccac
atcaaaccaaagactgtgtttactcacagaggacctgcaggaacacagac
atcctgggtttgcttcctaacttcctattatgcataaagaatgcattgtc
ttttcaagccggcactgagacctgacatttgtccatgagtcaccgcgatg
tagttaaaagagcagagggcggccttataagcagctagcgagttccaaag
atggtgcagtcacaaccactcactcttagctgtcagcgaatttctcggaa
ctgcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30523068_30523292
seq2: B6Ng01-002K23.b_53_277

seq1  TCTGTCTCTAGACTCTAGTCATACTGATACACAAATAGCTTAGAGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTAGACTCTAGTCATACTGATACACAAATAGCTTAGAGCAAAG  50

seq1  GGAGGGAAGCGGCACACCAGGGACTCGATCACGAAATTTGCAAGCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGCGGCACACCAGGGACTCGATCACGAAATTTGCAAGCAGTGT  100

seq1  TGCCGATCAAGCGCTCCTGGTCAAGGTCAACTTACAGCTTCTGGGGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGATCAAGCGCTCCTGGTCAAGGTCAACTTACAGCTTCTGGGGTTTG  150

seq1  AGTCACAGGAACAGAAATGTTCTAGAGCGGATGTGTGGGTACATAGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGAACAGAAATGTTCTAGAGCGGATGTGTGGGTACATAGTGGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGTG  225
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTG  225

seq1: chr16_30655880_30656987
seq2: B6Ng01-002K23.g_67_1174 (reverse)

seq1  AGGTGCAG-TCTGAGAGTTTGGCTGACAGCT-AGAGTTGAGTGGTTGTGA  48
      |||||||| || ||||  || |||||||||| |||| |||||||||||||
seq2  AGGTGCAGTTCCGAGAAATTCGCTGACAGCTAAGAG-TGAGTGGTTGTGA  49

seq1  CTGCACATCCTTGGGAACTCGCTAGGCTGCTTAT-AGGCCG-CCTCTGCT  96
      ||||||   ||| ||||||||||| ||||||||| |||||| ||||||||
seq2  CTGCACCATCTTTGGAACTCGCTA-GCTGCTTATAAGGCCGCCCTCTGCT  98

seq1  CTTTTAACTACATCGCGGTGACTCATGGGACAAATGTCAGGTCTCAGTGC  146
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTAACTACATCGCGGTGACTCAT-GGACAAATGTCAGGTCTCAGTGC  147

seq1  CGGCTTTGAAAAGACAATGCATTCTTTATGCATAATAGGAAGTTTAGGAA  196
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGGC-TTGAAAAGACAATGCATTCTTTATGCATAATAGGAAG-TTAGGAA  195

seq1  GCAAACCCAGGATGTCTGTGTTCCTGCAGGTCCTCTGTGAGTAAACACAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCAGGATGTCTGTGTTCCTGCAGGTCCTCTGTGAGTAAACACAG  245

seq1  TCTTTGGTTTGATGTGGAGACAGGGTTGGGGGAGGGGCAGCATACATACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTTGATGTGGAGACAGGGTTGGGGGAGGGGCAGCATACATACA  295

seq1  CACAGCAATTTGAAAGGAATGG-AAAGAAATGAGAAGGAAGGGCCTAGAG  345
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACAGCAATTTGAAAGGAATGGAAAAGAAATGAGAAGGAAGGGCCTAGAG  345

seq1  CTGGTAGCACTTGCCAGTAATGTCAGCATTTGAGGTTGAGGGATGCTGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCACTTGCCAGTAATGTCAGCATTTGAGGTTGAGGGATGCTGGG  395

seq1  AGTGGAGCCAGGAAGACTAGGTTTGAGGTCAGCCTGTGAACTCATCTTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCAGGAAGACTAGGTTTGAGGTCAGCCTGTGAACTCATCTTAA  445

seq1  AAAAAAAAAAGGTGTGTGTGTGGGTGGGTGTTTGTGTGTGTATGTTTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGTGTGTGTGTGGGTGGGTGTTTGTGTGTGTATGTTTGTG  495

seq1  TGTTTGTGTGTGGGGGTGTTTGTGTGTGCGGGTGTTTGTGTGTGTGTGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGGGGGTGTTTGTGTGTGCGGGTGTTTGTGTGTGTGTGTG  545

seq1  TGTGGGGGGGTGTTTGTGTGTGTGTGTGGGGGGGTGTTTGTGTGTGTGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGGGTGTTTGTGTGTGTGTGTGGGGGGGTGTTTGTGTGTGTGTG  595

seq1  CCTGTGTGTGTGTGTGTGTTTGTGTGTTTGTGTGTGTGGGTGTTTGTGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTGTGTGTGTGTTTGTGTGTTTGTGTGTGTGGGTGTTTGTGTG  645

seq1  TGTGTATGTTTGTGTGTTTGTGTGTGTGTGTCTATGTGGGTGTGTGTGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTTTGTGTGTTTGTGTGTGTGTGTCTATGTGGGTGTGTGTGTG  695

seq1  CACCCTGGTTTCCTTGCCATGGTTTGGAGATACGCTGCTGCTGGGCCCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGTTTCCTTGCCATGGTTTGGAGATACGCTGCTGCTGGGCCCAG  745

seq1  TGGCCGTGTCTGATGGGAAAGCACACAGACACAAACTGTTGTTCTGTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTGTCTGATGGGAAAGCACACAGACACAAACTGTTGTTCTGTTTT  795

seq1  AGTGGAACTGGCTTTTGGGCGTGCCTCATGGATTTCTGGCGATTTTATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACTGGCTTTTGGGCGTGCCTCATGGATTTCTGGCGATTTTATTT  845

seq1  TCAATTCAGAGAGGCTGCGGCTTTCATCGGGAGCCCACAGCACTTCTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAGAGAGGCTGCGGCTTTCATCGGGAGCCCACAGCACTTCTCTC  895

seq1  TCAGCAGTGTGACTGTCCACCCGTGTGGGTAAAGAAGATGTTGCAAGGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTGTGACTGTCCACCCGTGTGGGTAAAGAAGATGTTGCAAGGGA  945

seq1  CACAGGCAGGCATCCAGTTTTCATCTCGACAGTCTCCAGTCAAGTTGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAGGCATCCAGTTTTCATCTCGACAGTCTCCAGTCAAGTTGCAA  995

seq1  TGGTAGTACCTGACTGCAGGCTGGGCTGGCCTTAGCTACTACACTGGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTACCTGACTGCAGGCTGGGCTGGCCTTAGCTACTACACTGGGAA  1045

seq1  CCTTGGCGGCGGGAGGGGGGGGGGGCGCGGCACCGACCCATCCTTGAGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCGGCGGGAGGGGGGGGGGGCGCGGCACCGACCCATCCTTGAGGC  1095

seq1  AGTTATGGAATTC  1108
      |||||||||||||
seq2  AGTTATGGAATTC  1108