BAC Information

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BAC

Clone NameB6Ng01-002O09
Chromosome16 (Build37)
Map Location 48,902,411 - 48,903,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg
Downstream gene2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O09.bB6Ng01-002O09.g
ACCDH840786DH840787
length1,226780
definitionDH840786|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O09, 5' end.DH840787|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgttccgtgcgtgagctgtgtaggtgttgtctttagcaatggg
agcttgccctcagtttgtgaagagcaacatcctggaaacaatttgggctg
tttggatgttcccatgggatgcctgtgacttgcaactcaattagatataa
cctaatggtgagattggaggctttatttggtgacatgagatgcccagttg
gggcagtcttcttcattacttggagatttcatttagattgccatcacatg
tgtatttattttaggaagtttcttctgtattaggtttccataccacctct
caaatggcccttacttttcgctctgtctgtattattttcttcataccctc
tgccttacccctacccacttgatcccccagttccagtccccagcccgaat
ccatacataattgtctattctatttcccttcccttagacctattgaatct
cttactctgtacctatgctattgattccacagattgcagcttgtttatca
tctacataatagccaatatcctcacataagcaaacatataccatatctgt
cctgtgcctgggatacctcactcataatgcctttttttttttctagcttc
aactatttactaatggatttcatatttttttcagggctgagtaatactcc
attgtgtaaatgcaccacattttctttatctattcatgaagtacatgcaa
actaaaaactttatgtctggctttaaatgaaatgtatagtaaagcctttg
tgtctggcattcagtgaaatgtttcagcaaagcctttgctatgattgggt
taatcggtagaggccgaaaattgttttgtactgtttgaaccttgaagaaa
tgttgccccattccagtctcactctcataagggaatcaactttttaaaaa
caagtatacaaacaaaaatttagcagtaataattcataagaaattcattt
tgagataaatatttgggtacacatataactaccattattaaagattaagg
aaatttgatatagtgagatgatatacatcttagtttacaagaaaatgaat
tcttgctgatgtagatattgcaaaatataaagattctaatatttttcgaa
cagtcaaatttttattccatattgcaatcactggactcaaaattttgatt
atatggttgagattagttacaaattgaacatagacaaaagtcagcctata
tacatgaagacttcactcgctcgtat
gaattctctgtgccccactttttaattcggtcatttgggttgttggtgtc
taatttcttgagttctttgtaaattttgtatattaccctgtcagatgtat
tgttggtgaagacctttcacaatctgtaggctgcttgtttgtcctattga
cagagttctttgccttatagtagctttggaatttatgaggtcccatttat
caatttttgatcttagtgcctgtgccattggtgttctgttcaggaaattg
tctcatgtatcaatgcattcaagggtatctctctctttctcttctatgag
gtttagtttatccactttaagctgaggtccttgatctacttggacttgag
ttttttgcagagtcataaatatgaatctatttgaattcctctacatgtag
acaaccaattagtccagtaccacctgttaaagatgctttattttttcatt
gtatgagtttggctcctttatcaaaaatcaagtgaccatatggttgggag
ccatttgccacttctctgaagtagagagagaagggagagggagggaggga
ggcaggtagagatacagagagagacagagacacagaggacagagaaagag
acagagagattgagaaaagaaagtctgcctgctaggcacaggtaaggcag
gtcagagtctgttggcaggttttcctgctggggcattgaatgataagaag
ttccaatcaaggtgaagaattgaagattctattgaccttggtggaaggaa
caggtttttaccttttttatgtttgctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48902411_48903188
seq2: B6Ng01-002O09.g_70_849

seq1  GAATTCTCTGTGCCCCACTTTTTAATTCGGTCATTTGGGTTGTTGGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCCCCACTTTTTAATTCGGTCATTTGGGTTGTTGGTGTC  50

seq1  TAACTTCTTGAGTTCTTTGTAAATTTTGTATATTACCCTGTCAGATGTAT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTGAGTTCTTTGTAAATTTTGTATATTACCCTGTCAGATGTAT  100

seq1  TGTTGGTGAAGACCTTTCACAATCTGTAGGCTGCTTGTTTGTCCTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGAAGACCTTTCACAATCTGTAGGCTGCTTGTTTGTCCTATTGA  150

seq1  CAGAGTTCTTTGCCTTATAGTAGCTTTGGAATTTATGAGGTCCCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTTTGCCTTATAGTAGCTTTGGAATTTATGAGGTCCCATTTAT  200

seq1  CAATTTTTGATCTTAGTGCCTGTGCCATTGGTGTTCTGTTCAGGAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTGATCTTAGTGCCTGTGCCATTGGTGTTCTGTTCAGGAAATTG  250

seq1  TCTCATGTATCAATGCATTCAAGGGTATCTCTCTCTTTCTCTTCTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTATCAATGCATTCAAGGGTATCTCTCTCTTTCTCTTCTATGAG  300

seq1  GTTTAGTTTATCCACTTTAAGCTGAGGTCCTTGATCTACTTGGACTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTATCCACTTTAAGCTGAGGTCCTTGATCTACTTGGACTTGAG  350

seq1  TTTTTTGCAGAGTCATAAATATGAATCTATTTGAATTCCTCTACATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCAGAGTCATAAATATGAATCTATTTGAATTCCTCTACATGTAG  400

seq1  ACAACCAATTAGTCCAGTACCACCTGTTAAAGATGCTTTATTTTTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAATTAGTCCAGTACCACCTGTTAAAGATGCTTTATTTTTTCATT  450

seq1  GTATGAGTTTGGCTCCTTTATCAAAAATCAAGTGACCATATGGTTGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTTGGCTCCTTTATCAAAAATCAAGTGACCATATGGTTGGGAG  500

seq1  CCATTTGCCACTTCTCTGAAGTAGAGAGAGAAGGGAGAGGGAGGGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCCACTTCTCTGAAGTAGAGAGAGAAGGGAGAGGGAGGGAGGGA  550

seq1  GGCAGGTAGAGATACAGAGAGAGACAGAGACACAGAGGACAGAGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGAGATACAGAGAGAGACAGAGACACAGAGGACAGAGAAAGAG  600

seq1  ACAGAGAGATTGAG-AAAGAAAGTCTGCCTGCTAGGCACAGGTAAGGCAG  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGATTGAGAAAAGAAAGTCTGCCTGCTAGGCACAGGTAAGGCAG  650

seq1  GTCAGAGTCTGTTGGCAGG-TTTCCTGCTGGGGCATTGAATGATAAGAAG  698
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCAGAGTCTGTTGGCAGGTTTTCCTGCTGGGGCATTGAATGATAAGAAG  700

seq1  TT-CAATCAAGGTGAAGAATTGAAGATTCTATTGACCTTGGTGGAAGGAA  747
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATCAAGGTGAAGAATTGAAGATTCTATTGACCTTGGTGGAAGGAA  750

seq1  CAGGTTTTTAACTTTTTTTATTTTTGCTTTT  778
      ||||||||| || |||||||| |||||||||
seq2  CAGGTTTTT-ACCTTTTTTATGTTTGCTTTT  780