BAC Information

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BAC

Clone NameB6Ng01-002P23
Chromosome16 (Build37)
Map Location 63,736,971 - 63,842,617
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneNsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002P23.bB6Ng01-002P23.g
ACCDH840854DH840855
length9291,101
definitionDH840854|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P23, 5' end.DH840855|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,841,690 - 63,842,617)(63,736,971 - 63,738,088)
sequence
gaattccatactgacaattttgctgacacattttttaaaaaatagcacat
atgtggctatttttaaagacatttttaaaatttattttattgatgagtat
actgtagctgtcttcagacacaccagaatagggcatcagatcccattaca
tatggttgtgagccaccatgtggttgctgggaatcgaactcaggacctca
ggaagagcagtcagtgctcttaaccactcagccatctctccatgccctgg
ctatttttttaactacaggaaattaatttgtataccaaaacaacagtcta
catgttttactttttatgaagacataaagaaatgaacttaccacatatta
agaattagggtaaatagattttttttaattctctgcacaaattaagaatt
tcccattgttaatctcgatgactttataataaaataagttaagggtgtgt
ctacattaagacacatgttgggtgttgagggtagagtgaacaaaatcttc
taataaaaagtatggcatatatgccaatcaacagtatcagcaaataaggt
tgattgaaaatggaaactgaatgttacctcagacctcctgaaccagaaag
tgcatctcagcatgctatctcccatttggttgttaagcacaaacatgggc
aaaatctctctgccagttgtgcttgcattggccagcctgccttactcttt
ccctcagtgcacagttttcaattacttctttgtctctgtgtgggagaaga
cattttcccccagtgattttctttcttccctttgcttccctctgttgatc
ttgtagacatgatttcacatttttagatgtttcactgcaggcaaacgact
tgaagtttatcacataattttcagacaaaaagtaaaaaaaaaaatgttgt
tgctgtttgtgtttttaatgtagtgtgtg
gaattcagcatttctcaaagaattcaatgaaacattaattatcattgttc
ttggcaagtatatgtggaaatttggaaatggtttgcagtatgagaaatat
atggaaacacatttactcctcaaatatttcctatttcttttgaaaagtaa
tgttcctataactatgacatgtttttcttccagaatttattattcctgaa
aaggagatctatataacctgtgactgcagtataattcatgattttttatt
cttaggctatatacaccataattaattttactcatatatgttccattaaa
tgtcaacccatactaaatatttcagctcatggggaggagttctatactcg
gagatattagaaataataaaatgtctcattattctgttacatagactata
tacctacaatgtcatttaatttgtacttttcattcatatcccttttttaa
gtaagacgaattagcatacattacattgcttaataataaaaacagcattt
gggttttattctaacgtttccttgattacattatatactttatcttacag
gcatgtgatagctgaatgagaatagcctcagtaatcagactgagagtgtt
caaatcaaagttgtatgtcttactgattttgctgctttagagatattaac
atctctgagttatgctttttatccttattaatgggatttgtacctcctac
ctttattgctgaaatattatgtgcagcatatctaatacataatatacctc
catacattctcacagcctaactcataaatcatttcaatgtttatgtgtgg
tatattaatttgtttgctgtttattgaaacatttatcacagactatgagc
tgttacatacatcaccttctttaaaaagtaaccatatggtattggaaaac
taaattttttaacttttgaaagaaattcttattaattctaatcagagtac
ttgacaatttgtctttcctacatttttactctggaagtttctaatcaatg
aaaacagtttgacaggaagaaactcagaattgctctgacatcatagcttt
ttcagttagaaagatgatggctaacctgtgtagatgcttagtcaaggctg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63841690_63842617
seq2: B6Ng01-002P23.b_45_973 (reverse)

seq1  CACACACTACA-TAAAAACACAAACAGCAACAACATTTTTTTTTTTACTT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACACACTACATTAAAAACACAAACAGCAACAACATTTTTTTTTTTACTT  50

seq1  TTTGTCTGAAAATTATGTGATAAACTTCAAGTCGTTTGCCTGCAGTGAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAAAATTATGTGATAAACTTCAAGTCGTTTGCCTGCAGTGAAA  100

seq1  CATCTAAAAATGTGAAATCATGTCTACAAGATCAACAGAGGGAAGCAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAAAATGTGAAATCATGTCTACAAGATCAACAGAGGGAAGCAAAG  150

seq1  GGAAGAAAGAAAATCACTGAGGGAAAATGTCTTCTCCCACACAGAGACAA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAATCACTGGGGGAAAATGTCTTCTCCCACACAGAGACAA  200

seq1  AGAAGTAATTGAAAACTGTGCACTGAGGGAAAGAGTAAGGCAGGCTGGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAATTGAAAACTGTGCACTGAGGGAAAGAGTAAGGCAGGCTGGCC  250

seq1  AATGCAAGCACAACTGGCAGAGAGATTTTGCCCATGTTTGTGCTTAACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGCACAACTGGCAGAGAGATTTTGCCCATGTTTGTGCTTAACAA  300

seq1  CCAAATGGGAGATAGCATGCTGAGATGCACTTTCTGGTTCAGGAGGTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGGAGATAGCATGCTGAGATGCACTTTCTGGTTCAGGAGGTCTG  350

seq1  AGGTAACATTCAGTTTCCATTTTCAATCAACCTTATTTGCTGATACTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATTCAGTTTCCATTTTCAATCAACCTTATTTGCTGATACTGTT  400

seq1  GATTGGCATATATGCCATACTTTTTATTAGAAGATTTTGTTCACTCTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCATATATGCCATACTTTTTATTAGAAGATTTTGTTCACTCTACC  450

seq1  CTCAACACCCAACATGTGTCTTAATGTAGACACACCCTTAACTTATTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCCAACATGTGTCTTAATGTAGACACACCCTTAACTTATTTTA  500

seq1  TTATAAAGTCATCGAGATTAACAATGGGAAATTCTTAATTTGTGCAGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTCATCGAGATTAACAATGGGAAATTCTTAATTTGTGCAGAGA  550

seq1  ATTAAAAAAAATCTATTTACCCTAATTCTTAATATGTGGTAAGTTCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAATCTATTTACCCTAATTCTTAATATGTGGTAAGTTCATTT  600

seq1  CTTTATGTCTTCATAAAAAGTAAAACATGTAGACTGTTGTTTTGGTATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTCTTCATAAAAAGTAAAACATGTAGACTGTTGTTTTGGTATAC  650

seq1  AAATTAATTTCCTGTAGTTAAAAAAATAGCCAGGGCATGGAGAGATGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTCCTGTAGTTAAAAAAATAGCCAGGGCATGGAGAGATGGCT  700

seq1  GAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCGATTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCGATTCC  750

seq1  CAGCAACCACATGGTGGCTCACAACCATATGTAATGGGATCTGATGCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATATGTAATGGGATCTGATGCCCT  800

seq1  ATTCTGGTGTGTCTGAAGACAGCTACAGTATACTCATCAATAAAATAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTGTGTCTGAAGACAGCTACAGTATACTCATCAATAAAATAAAT  850

seq1  TTTAAAAATGTCTTTAAAAATAGCCACATATGTGCTATTTTTTAAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGTCTTTAAAAATAGCCACATATGTGCTATTTTTTAAAAAAT  900

seq1  GTGTCAGCAAAATTGTCAGTATGGAATTC  928
      |||||||||||||||||||||||||||||
seq2  GTGTCAGCAAAATTGTCAGTATGGAATTC  929

seq1: chr16_63736971_63738088
seq2: B6Ng01-002P23.g_68_1168

seq1  GAATTCAGCATTTCTCAAAGAATTCAATGAAACATTAATTATCATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTTCTCAAAGAATTCAATGAAACATTAATTATCATTGTTC  50

seq1  TTGGCAAGTATATGTGGAAATTTGGAAATGGTTTGCAGTATGAGAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGTATATGTGGAAATTTGGAAATGGTTTGCAGTATGAGAAATAT  100

seq1  ATGGAAACACATTTACTCCTCAAATATTTCCTATTTCTTTTGAAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACACATTTACTCCTCAAATATTTCCTATTTCTTTTGAAAAGTAA  150

seq1  TGTTCCTATAACTATGACATGTTTTTCTTCCAGAATTTATTATTCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATAACTATGACATGTTTTTCTTCCAGAATTTATTATTCCTGAA  200

seq1  AAGGAGATCTATATAACCTGTGACTGCAGTATAATTCATGATTTTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCTATATAACCTGTGACTGCAGTATAATTCATGATTTTTTATT  250

seq1  CTTAGGCTATATACACCATAATTAATTTTACTCATATATGTTCCATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTATATACACCATAATTAATTTTACTCATATATGTTCCATTAAA  300

seq1  TGTCAACCCATACTAAATATTTCAGCTCATGGGGAGGAGTTCTATACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCCATACTAAATATTTCAGCTCATGGGGAGGAGTTCTATACTCG  350

seq1  GAGATATTAGAAATAATAAAATGTCTCATTATTCTGTTACATAGACTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTAGAAATAATAAAATGTCTCATTATTCTGTTACATAGACTATA  400

seq1  TACCTACAATGTCATTTAATTTGTACTTTTCATTCATATCCCTTTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACAATGTCATTTAATTTGTACTTTTCATTCATATCCCTTTTTTAA  450

seq1  GTAAGACGAATTAGCATACATTACATTGCTTAATAATAAAAACAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACGAATTAGCATACATTACATTGCTTAATAATAAAAACAGCATTT  500

seq1  GGGTTTTATTCTAACGTTTCCTTGATTACATTATATACTTTATCTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTATTCTAACGTTTCCTTGATTACATTATATACTTTATCTTACAG  550

seq1  GCATGTGATAGCTGAATGAGAATAGCCTCAGTAATCAGACTGAGAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGATAGCTGAATGAGAATAGCCTCAGTAATCAGACTGAGAGTGTT  600

seq1  CAAATCAAAGTTGTATGTCTTACTGATTTTGCTGCTTTAGAGATATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAAGTTGTATGTCTTACTGATTTTGCTGCTTTAGAGATATTAAC  650

seq1  ATCTCTGAGTTATGCTTTTTATCCTTATTAATGGGATTTGTACCTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGTTATGCTTTTTATCCTTATTAATGGGATTTGTACCTCCTAC  700

seq1  CTTTATTGCTGAAATATTATGTGCAGCATATCTAATACATAATATACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGCTGAAATATTATGTGCAGCATATCTAATACATAATATACCTC  750

seq1  CATACATTCTCACAGCCTAACTCATAAATCATTTCAATGTTTATGTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCTCACAGCCTAACTCATAAATCATTTCAATGTTTATGTGTGG  800

seq1  TATATTAATTTGTTTGCTGTTTATTGAAACATTTATCACAGACTATGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATTTGTTTGCTGTTTATTGAAACATTTATCACAGACTATGAGC  850

seq1  TGTTACATACATCACCTTCTTTAAAAAGTAACCATATGGTATTGGAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATACATCACCTTCTTTAAAAAGTAACCATATGGTATTGGAAAAC  900

seq1  TAAATTTTTTAACTTTTGAAAAGAAATTCTTATTAATTCTAATCAAGAGT  950
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  TAAATTTTTTAACTTTTG-AAAGAAATTCTTATTAATTCTAATC-AGAGT  948

seq1  ACTTGACAATTTTGTCTTTCCTACATTTTTACTCTGGAAGTTTCTAAATC  1000
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTGACAA-TTTGTCTTTCCTACATTTTTACTCTGGAAGTTTCT-AATC  996

seq1  AAATGAAAAACAGTTTGACAGGAAGATACTCAGGAATTTGCTTCTTGACA  1050
       |||| |||||||||||||||||||| ||||||  | |||||   |||||
seq2  -AATG-AAAACAGTTTGACAGGAAGAAACTCAG--AATTGCT--CTGACA  1040

seq1  TCATTAAGCTTTTTCAAGGTTAG-AAGATGATGGTTTACCCTTGTGTAGA  1099
      ||||  ||||||||||  ||||| |||||||||| | |||  ||||||||
seq2  TCAT--AGCTTTTTCA--GTTAGAAAGATGATGGCTAACC--TGTGTAGA  1084

seq1  TGCTTAGGTTCAAGGCTGA  1118
      |||||||  ||||||||||
seq2  TGCTTAG--TCAAGGCTGA  1101