BAC Information

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BAC

Clone NameB6Ng01-004N09
Chromosome16 (Build37)
Map Location 79,114,064 - 79,115,250
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004N09.bB6Ng01-004N09.g
ACCDH842139DH842140
length1,1491,179
definitionDH842139|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N09, 5' end.DH842140|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatggctgagaagcacttaaaaaaatg
ttcaacatccttaatcatcagggaaatgcaagtcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtggcagc
agatgctggcgaggatgtggagaaaaaaggaacactcctctattgctggt
gggattgcaagtttgtacaaccactctggaaatcagtctagaggttcctc
agaaaactggacatggtactaccggagaattcagcaatacctctcctggg
catatacccagaaaatgttctaactggtaataaggacacatgctccacca
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgtcactcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctgttaaaaacaatgaatttttgaaattcttggcaa
atggatgtatctggaggatatcatcctgagtgaggtaacccaatcacaaa
agaacacacatgacatacactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaatttgcaaaacaaaagaaaatcaaaaagaag
gaagaccaacacttggatacctcactcctccttagaatagggaacaaaat
acccatggaaggagttacagagtttggagctatgacgaaaggatgaacca
tccagagactacaccacccggggatccatcccaaaatcagccaccaaaca
cagacactattgcatatgccagcataattttctgaaaggaccctgatata
gttgtctcatgtgaggctagaccagtgcctggcaaatacagaagtggatg
ctcacagtcatctattggatggaacacagggcccccaatggaggagctag
agaaagtacccaaggagctgaacgggtctgcaaccctatagtggaacaca
tatgaactaccagtacccacagagctgtgtctcttagctgcatatgagcg
agatggctagtcagcatcgttggcaggaaggtcctgtcttgcaacttaca
tgcccagtacaggggaacacaggccagaatggagtgggtgtgtaagtga
gaattcactgcctcatagcccactgtatgagctcttggagctttaacaag
tttagtagtctttctgctacactctcatcgtctggtctatagaaaccata
atcatcccttgagtgacattagcaatttctttaaatgaataaatggatgg
accaaagagtgatcacataaataagtagaatatttttattaatgctttga
taattacatacatgcattacaataatacacgatacctaattcatatatat
acacatatatacaatacaatgtgtattgaccacactcctgtttctttcta
ccactggttcatctcagaaccactcccctcttgcctccccctcccccttc
ttttattcttcacaatgaactgtgagttttgaacttcctcttctctcctt
ccactgtgctctcagaagtagctgtcagcaagggaagaaggtcagcacct
ttgggccatgacccacttaaatgcttctttagctggtagaaaaattcaac
acagcttcaaatgtcagcattgctgtagattcccccagtgtcaccctcca
gggtaagaatgctgtgtgcaaatataaattctcggcttttcaaataaaat
actagaagttattatatctgtcagatgaaacagataacacaagtctgtaa
aattcttaaaatttcgttgctcacaaactaccttggggactagagagatg
tctgaacagtcgagaatacttttttgtttgtttgtttatttgtttgtttt
ttaagagggctcaggtttgaggatcggcgtctttaatcaaggtcatttat
catagcctgtgtacttcagttccagaagctcttacaccctcctctgggcc
tctgtgggtactaagtaagcctacagtcttcattcatacatgcagttcaa
acatataaataaatctacagagttaaagcaaaactattctttgaatgtaa
attgatttcgtttccaattaaaagagcagtgacagattgagaagcgaaac
atgatcacagaaagttgaaaattagagttatattatattgaagcaaaggg
attaaatagatttttttttgtatcaaaaaagatgaaaaatagtcataaat
acagcagatgataacatgcgtactaaaagctgtacagaaaacccttcact
ctataataaactgaagtcgaacctatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79114064_79115250
seq2: B6Ng01-004N09.g_68_1246

seq1  GAATTCACTGCCTCATAGCCCACTGTATGAGCTCTTGGAGCTTTAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCTCATAGCCCACTGTATGAGCTCTTGGAGCTTTAACAAG  50

seq1  TTTAGTAGTCTTTCTGCTACACTCTCATCGTCTGGTCTATAGAAACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGTCTTTCTGCTACACTCTCATCGTCTGGTCTATAGAAACCATA  100

seq1  ATCATCCCTTGAGTGACATTAGCAATTTCTTTAAATGAATAAATGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCTTGAGTGACATTAGCAATTTCTTTAAATGAATAAATGGATGG  150

seq1  ACCAAAGAGTGATCACATAAATAAGTAGAATATTTTTATTAATGCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAGTGATCACATAAATAAGTAGAATATTTTTATTAATGCTTTGA  200

seq1  TAATTACATACATGCATTACAATAATACACGATACCTAATTCATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATACATGCATTACAATAATACACGATACCTAATTCATATATAT  250

seq1  ACACATATATACAATACAATGTGTATTGACCACACTCCTGTTTCTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATACAATACAATGTGTATTGACCACACTCCTGTTTCTTTCTA  300

seq1  CCACTGGTTCATCTCAGAACCACTCCCCTCTTGCCTCCCCCTCCCCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTTCATCTCAGAACCACTCCCCTCTTGCCTCCCCCTCCCCCTTC  350

seq1  TTTTATTCTTCACAATGAACTGTGAGTTTTGAACTTCCTCTTCTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTCACAATGAACTGTGAGTTTTGAACTTCCTCTTCTCTCCTT  400

seq1  CCACTGTGCTCTCAGAAGTAGCTGTCAGCAAGGGAAGAAGGTCAGCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGCTCTCAGAAGTAGCTGTCAGCAAGGGAAGAAGGTCAGCACCT  450

seq1  TTGGGCCATGACCCACTTAAATGCTTCTTTAGCTGGTAGAAAAATTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCATGACCCACTTAAATGCTTCTTTAGCTGGTAGAAAAATTCAAC  500

seq1  ACAGCTTCAAATGTCAGCATTGCTGTAGATTCCCCCAGTGTCACCCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCAAATGTCAGCATTGCTGTAGATTCCCCCAGTGTCACCCTCCA  550

seq1  GGGTAAGAATGCTGTGTGCAAATATAAATTCTCGGCTTTTCAAATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAATGCTGTGTGCAAATATAAATTCTCGGCTTTTCAAATAAAAT  600

seq1  ACTAGAAGTTATTATATCTGTCAGATGAAACAGATAACACAAGTCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTTATTATATCTGTCAGATGAAACAGATAACACAAGTCTGTAA  650

seq1  AATTCTTAAAATTTCGTTGCTCACAAACTACCTTGGGGACTAGAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAAATTTCGTTGCTCACAAACTACCTTGGGGACTAGAGAGATG  700

seq1  TCTGAACAGTCGAGAATACTTTTTTGTTTGTTTGTTTATTTGTTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAGTCGAGAATACTTTTTTGTTTGTTTGTTTATTTGTTTGTTTT  750

seq1  TTAAGAGGGCTCAGGTTTGAGGATCGGCGTCTTTAATCAAGGTCATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGGCTCAGGTTTGAGGATCGGCGTCTTTAATCAAGGTCATTTAT  800

seq1  CATAGCCTGTGTACTTCAGTTCCAGAAGCTCTTACACCCTCCTCT-GGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATAGCCTGTGTACTTCAGTTCCAGAAGCTCTTACACCCTCCTCTGGGCC  850

seq1  TCTGTGGGTACTAAGTAAGCCTACAGTCTTCATTCATACATGCAGTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTACTAAGTAAGCCTACAGTCTTCATTCATACATGCAGTTCAA  900

seq1  ACATATAAATAAATCTACAGAGTTAAAGCAAAACTAT--CTTGAATGTAA  947
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  ACATATAAATAAATCTACAGAGTTAAAGCAAAACTATTCTTTGAATGTAA  950

seq1  ATTGATTTCGTTTTCCAATTAAAAGAGGCAGTGACAGATTGAGAAAGCGA  997
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  ATTGATTTCG-TTTCCAATTAAAAGA-GCAGTGACAGATTGAG-AAGCGA  997

seq1  AACATGATCACAAGAAAGTTGAAAAATTAGAGGTTATA-TATATTGAAAG  1046
      ||||||||||| ||||||||| ||||||||| |||||| ||||||| |||
seq2  AACATGATCAC-AGAAAGTTG-AAAATTAGA-GTTATATTATATTG-AAG  1043

seq1  CAAAGGGATTAAATAAGATTTTCTATGTATCAAAAAAAGAAAGGAAAAAT  1096
      |||||||||||||||   |||| | |||||||||||   | | |||||||
seq2  CAAAGGGATTAAATAGATTTTTTTTTGTATCAAAAA---AGATGAAAAAT  1090

seq1  AGTCATAAATACAGCAGATGATATACATGGCGTACTAAGAGCTGTAACAG  1146
      ||||||||||||||||||||||| |||| ||||||||| |||||| ||||
seq2  AGTCATAAATACAGCAGATGATA-ACAT-GCGTACTAAAAGCTGT-ACAG  1137

seq1  -AGACACTTCACTCTATAATAACATGAGGTCAGACCTATCAA  1187
       | || ||||||||||||||||  ||| |||  |||||||||
seq2  AAAACCCTTCACTCTATAATAAACTGAAGTCGAACCTATCAA  1179